RNA id: TU31744


Basic Information

Item Value
RNA id TU31744
length 3122
lncRNA type inter_gene
GC content 0.32
exon number 4
gene id G25303
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24879365 ~ 24911371 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAAGAGTCTGTGCACACTGATTAACAAAGAGAAATCCGTATGAATAGGAATTGCCTTCAGATAATACATTGCATCATCTCGGATCGTGTATATaaatgaatcAGACTGATAATTTGGAGATCTTCCAAAAGGGAGTCTTGCCAGAGCAAACTCCTTGGAGCAAGAGGTCTGTGTATGGGAGGCTTGCCCAGTAGAGCTTTGTGGTTTCCCTGTGTAGCCTTCTCTCCAATCTCAGGGATTACTCTCATGTTGAAGGCTAAATGGACCCTGCAGCTAGCTTTGGTAACAACTCACCTGTGGGAGGGAAGGGAGCAGGACACTGATCCTCAAAACTGACCGTGAAGGCCATCCACAAGAGTTCTGTGTCAAACTGTCTTTTCCAGGCATCCTGAAGAGAATGTGACCAAACACGAAGATGTAAGCATTTGTCATTTAGTAAATTACAGTCATTGAAGTTTAGTCAAGGGTTTTAATCTTGACAGACACAATTTAGTCataattacaaattgaaattaatttcaacATTAAGTACAAAGGGTGGCTGGACAGTGTAAGATAATTGAAATagtccttaaaaaaaaagacaaagacagtTACTTACTTGCAAATCAACACAATAACtactgaacaaaacatttacatttttccagtaATTTCCAACCCCCTAAATGTCTATCTACACATACATAGGATGATtctacatttagattttttaaatgtcaaatgtctTTGGCCAGTGCACTATTTGGTGCCCtaataaatcaaatcacattATGATTTTCATACAAGTGTATGATGAAAATCATATACTGAAGAGaattgaaaatgattttgtatatatatgttcattCTATTTTGTTGGAATGTGTGCTGTACCTGGAATGTAAGCATGTAACAGGAACTATTCACAAATTgaagttcttaaaaaaaaaaaaaaaaaaaaaaaaacatatatatataaatgtaagtgGGTGTCATTTACAACTTATGGAAATGCAAGTAAGAATTACATaaacttaaaattatattttaatatttgtaccATACAAAACACATTGTGTTATGATCCTTCTATTGTTAAAGGACTTCAATCAGACACAAGATCAAAGAAGCAGTCTGGTCAGTAATTATTGTGGTCTACAGAGTTGCAGTAGTGGAATCTTAATTATTGAAACCCTGtccatatatatatattcatgggAATAActttagcttttattttattattctgttagGACAATCACATAAGTTATGAGACTTATAAACAGAAAAGTCaacaaatcattatttaaatatttaaatgagaagGCTGTATAACAAACATACAATAGTATGGATGATGATGTTAAttctcatttgtgtttttgccaaataaatacatgttgctAATGTAAAGTTCCTTTAAAgctccttttttatttctgcaaaggTTGTAATGTATTAGAGGCCAAATGTAATACATATCCAggtgttttcagtattttctttaCCTGGCTAGTGTTTACAGATTAAAGCAGTTATGATTTTTAAAGTGCTGAATAAGTCTTGGTTTCCATTTCCAATTCATGATGAGTTCAGAAGGGATACTATTCTCAATGCAATTGGtggttgatttatattttatttgattggattcagtgatggaaaaaaaagttgtcCTTTGTTGAACAACAGATGTGTCTTATGTACACACATGGAACCATCCTATAGAAATGCtagaaataatgtaatatgtttttttcatacatCACTAAATCAAATAGCCTATATAGCCTATTGGACGCATTATAATAACTATTATATCTagacctacacacacacacttactaaCCTGTAAATGCACTGAAGAATGTAAATACTATATTATGAATGACTACATCATGTCACACTCCACATGCCATCAAATATTTTAAGCTTATTTTTTATGGTGCATTTTAGTGCTCAAAATACTATTTGAtatccataataataatttgcatttttcgGTAGGTCCttccatttgtattgtatttcagtaaagtacgaatacatttgaaacactTTCTTAAAACTGTTGTAAATAGTATATTCTCTACAATTATTACTTCTGCGAAATCTTCCACAGAAATGCGactgaagtaaataaatacaaatagttgCTGACACCTCTGGCGTATTTTGTTACGcgttttaaataatacaataacgtACCTTAATATTTACGTTCTTTACATTCACAACAACAGGACACGTTGGGAGCTGTCTTGCAGGTCAAAGCCCATATGCTTGTTTACAGTATTTATGTGAGATGCCaactaaatacaaaaccaaaactgaCAGACATGTTTTATAGGCTATACTCAAATTAATATCCAAGTTCTGTCCTATGTCGTATTTTAGAATTTATggggaacattttaattttaaccaaCCCATGTGATGTTGCAGGTACCGATACCAATTTGAATGCTCGTCTATCTAAGGTACCCTTTCTCCAGAAATGTATGACTAGTAAAGAATACGCATAGATATATTTAACTTACATCACTAAGGCTACACAAACTGAGGATAGCCaacagtaaattattttaacataattataaaagccataaaaacaacagcatccTGTTTCATGAAGAACTATACACGAAAGAGCGCTAAGAACTATGGGAGTAAAACAATTGAATGGAAACATCTAGAAAATCTTGTAttgtaaaatgatttgttttagtACCACCCTGagttactttaaatgtaataatatataaaatagcaAGCATTATATTGGTATACGAAGCATGTTACaacaatgtaatatttgtaacaacaatgattatgtattgttttattgaatgcttttaaaaggtaaatgttACTGTGCTGACAATATGTAACTCGTGTTTTCCCCTCTATTGCTTAACGCGATTACAGTTAAAAGCATCATTATCCCGTCTGCCCTGCTAACACAATGGTGCTGATGATGTTGTACAACGTTGAgtcaacgttgtgtgttagctgggtagtCAAGATTTAACTAGACTgtgttaaaattattattagttttattatattgaaaCGGGTGTGCGTTGCTGTATCTTGATTGTTGGAAAGCAATTtgcaataaacatttattaaacacaag

Function

GO:

id name namespace
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0006814 sodium ion transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31739 lncRNA upstream 17497 24817342 ~ 24861868 (+) False G25300
TU31738 lncRNA upstream 17497 24820099 ~ 24861868 (+) True G25300
TU31615 lncRNA upstream 314513 24554268 ~ 24564852 (+) True G25209
TU31604 lncRNA upstream 379776 24491000 ~ 24499589 (+) False AMCG00007640
TU31603 lncRNA upstream 379776 24498934 ~ 24499589 (+) True AMCG00007640
TU31742 lncRNA downstream 23108 24934479 ~ 24941580 (+) True G25302
TU31813 lncRNA downstream 41754 24953125 ~ 24953328 (+) True G25367
TU31861 lncRNA downstream 404416 25315787 ~ 25321025 (+) True G25405
TU31915 lncRNA downstream 540162 25451533 ~ 25451793 (+) True G25445
TU32014 lncRNA downstream 1142330 26053701 ~ 26061246 (+) True G25531
AMCG00007658 mRNA upstream 73877 24804508 ~ 24805488 (+) True AMCG00007658
AMCG00007659 mRNA upstream 80359 24795449 ~ 24799006 (+) True AMCG00007659
AMCG00007657 mRNA upstream 85624 24785292 ~ 24793741 (+) True AMCG00007657
AMCG00007660 mRNA upstream 96240 24781357 ~ 24783125 (+) True AMCG00007660
AMCG00007655 mRNA upstream 118076 24742934 ~ 24761289 (+) True AMCG00007655
AMCG00007665 mRNA downstream 71302 24982673 ~ 24984023 (+) True AMCG00007665
AMCG00007664 mRNA downstream 73626 24984997 ~ 24988135 (+) True AMCG00007664
AMCG00007663 mRNA downstream 104305 25015676 ~ 25035688 (+) True AMCG00007663
AMCG00007670 mRNA downstream 156690 25068061 ~ 25076698 (+) True AMCG00007670
AMCG00007669 mRNA downstream 229559 25140930 ~ 25170375 (+) True AMCG00007669
TU31514 other upstream 684884 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 1685844 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 2596407 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 3812582 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 5823232 19051342 ~ 19056133 (+) True G23893
TU32400 other downstream 3172451 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 3541638 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 4091724 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 4854457 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 10699745 35611116 ~ 35620801 (+) False AMCG00007873

Expression Profile