RNA id: TU31876


Basic Information

Item Value
RNA id TU31876
length 1626
lncRNA type inter_gene
GC content 0.39
exon number 5
gene id G25415
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 25207774 ~ 25247379 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atcatgttttattaaaagagTATATTTTGACTACATTATAACCTGTACACTGCCTAACTTATGGACTTGTAGTGAATGGACGagttcattaataaaatatcattAGACAATTTTCAGTAccctataaataattttataaagAATGCAAGTGACAGAGATCAGTCCCATGCACCATATCACATAGGATCCTTTAGGTATCTTcagccaaaacaaaaaagccacaCGATGTATAAATGGAGAATAGAACACGAATAAATGATAATACATGCAATACTCCCATGTCTTTGTATTGGCATTAAGAAATGAAGCCTTTTGGCCAGTACATTGTGTTAACTTTCAGACCTATTTTGCAATTCTTACAGTAACAGGTGCTCATATGAATACCATTTACTTGTCCGTGACTGATAGATCTCAATAGAAGATATTCATTCCTATTAAAAAGGCATACCCCATCTGTCTGATTCccttaatacaaacaaaacaatgttcaGTGTAGGTTATCAAGCAAATAAAGATATGCCAATCGACAGGTTTAGTTTTCCCCTTTCCCCAGTAATGAAAGCTTTCCATTGCAAACCTATGAACATGTTTCCTATGCATTCTTACATATGTATTCTTAAATTGAACTATGCACCCTGCTAATTGGGTATAGATGTCTTTTTTCCCACCCCCTTTTAGTCATGTGAAGATACActggattaaaacaaagcataaaaCATGCAACTCATCAAAACATGGAATAGTAATTAAGCATTACTGGAAATCCACAGCTTGGACCCAAGTTCATGTTGCAATAGTAGAGTTCTGTTCAGTCGTACTCCTCAATGTTGTCTTTGGTTTACAGGAGATTTCGGACAGCTTTTATAGTCAAGGAAGAATATGCATCTTAAATGCtagtacacaaataaaaatgtgtgtgaaggATAATACATCTCGATCCAttactaaaaaaacaaatgtgataacACTTAATATGGGGCATTTTAATGGAAAGCAGGAGCAGGGAGCCTCGGAAGCACACACTTCATTAAAGATATTCCTCCTTTATTAGGtccatatttttttatgcacaGCAGGACACAACAAAGGCCAATTTAAATATCACATGAACATGGGTATATACGAGTCTTGGACTTGAAGAGCAGTGAACAACTGTCACATCATTCAGCAGACCTCTGAAGAAACTGAGGGGGCTGAGGTCTATGCCTTATCGATGCCCAACTCTTCCGGTGTGGAGATGCCCAGTTCTTTCAGAGTGGGCTGCAGTTCCTGAATCACGTAGGGGTAGATGTCTTTGTGAGGGCCGGCTTTATCCTGACTGCCTCTAGGATGCGGATTGCACTGGCCAAGTCGTTTAGCCTCCGGCAAGCTCTAAGTGCTGCATCAAGGATCTTTGGTTCAGGTACAAGGTCATAACCAACCAGGGTATTCATACCTGCTTTCCTCAGCTCCCAGGCATCAATGTCGGGTTTGTTGAAATAGGTAACCCAGCGGGCATCAAACTCTTCGTCTGTCTCCTGCTTTCCATGTGAGTAAAGCCGGGATGCCAGCGGAgctgaaataaagaaacactCCTGTGAGCAATGGGATGAGATATCAggtgcctttaaaaaaaaAGTTTCTAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31834 lncRNA downstream 218720 24988845 ~ 24989054 (-) True G25387
TU31821 lncRNA downstream 225635 24981934 ~ 24982139 (-) True G25375
TU31671 lncRNA downstream 665616 24498365 ~ 24542158 (-) True G25248
TU31655 lncRNA downstream 699955 24433080 ~ 24507819 (-) True G25239
TU31571 lncRNA downstream 839401 24368169 ~ 24368373 (-) True G25177
TU31882 lncRNA upstream 5337 25252716 ~ 25256361 (-) True G25421
TU31916 lncRNA upstream 204384 25451763 ~ 25452022 (-) True G25446
TU32026 lncRNA upstream 806385 26053764 ~ 26069317 (-) True AMCG00007687
TU32027 lncRNA upstream 806385 26053764 ~ 26070848 (-) False AMCG00007687
TU32121 lncRNA upstream 1751927 26999306 ~ 26999546 (-) True G25615
AMCG00007667 mRNA downstream 200944 24989512 ~ 25006830 (-) True AMCG00007667
AMCG00007668 mRNA downstream 228437 24966872 ~ 24979337 (-) True AMCG00007668
AMCG00007666 mRNA downstream 261978 24934308 ~ 24945796 (-) True AMCG00007666
AMCG00007661 mRNA downstream 397307 24805791 ~ 24810467 (-) True AMCG00007661
AMCG00007662 mRNA downstream 405396 24799840 ~ 24802378 (-) True AMCG00007662
AMCG00007677 mRNA upstream 75709 25323088 ~ 25334806 (-) True AMCG00007677
AMCG00007678 mRNA upstream 91983 25339362 ~ 25355884 (-) True AMCG00007678
AMCG00007679 mRNA upstream 112400 25359779 ~ 25362397 (-) True AMCG00007679
AMCG00007675 mRNA upstream 117658 25365037 ~ 25380395 (-) True AMCG00007675
AMCG00007676 mRNA upstream 142810 25390189 ~ 25454403 (-) True AMCG00007676
TU31562 other downstream 939853 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 1235109 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 4735070 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 4875963 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 5284621 19915146 ~ 19923153 (-) True AMCG00007487
TU31883 other upstream 16953 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 383416 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 9622056 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 11992710 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 12247532 37494911 ~ 37499392 (-) True G27416

Expression Profile