RNA id: TU31882


Basic Information

Item Value
RNA id TU31882
length 3571
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G25421
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 25252716 ~ 25256361 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tatgttaaatgtatttatttataaacagcaacacatcaattaaatacaaatattagcTTTCATTAATAGAACTATAAAGTATATGACATTATTGCATTCAGCACTCATTTACTTGTAAGAGCATTAATTAGCAAAGTGTTTAAAGAAAGGATTGTCAGGTCAGTTGCATAGTACAGATATGTGCAGTGACAGCAactgcacactgcactgtgGGATAAACACTATCTATAtagaacacactcacacatatagaatacatacacagacacgtGTTTGTagttcaaaacacaaatgtgcacataaaaaaatctaaacggACACAAAGCTTGCATTCAAGATGCGGCACAAAGCACCCAAAACATTCTTCAGTCACAGAAGGAAACACAGTCGCcatggaaaagaaagaataataacaaaacaaacagaagaaatacaatGAAGTTCCATGGCAATCGAATTTGTTTTATAAGATGTCATCAGATATTCAATACTACCAGTGTAACCATATTAGACATCTGTGAATGAGATGTTTATCAGTGGGATGCCTTAGAGGAAGCACATTTCAGTTATTGAATATTAAATCTAGCCGTTATATAAAAAGGCACACTCCTATGTACACCTGTCACTTTCCAGACATtgagcgaaaaaaaaaaaaaaaaagactgtcctattatataataaaagcaTGTGAGAAATTACATCTTTACAACAGAAATGCCTACATCTCCAATACATCTGGTTCATTCTACTGGTGTCTCCAAATTCAGAGTACTCAACATTGTCTGTGTACTCtcattgtaaatgaaaaacttACAATCTGGGTCCCTCTACAGGCCACTCTCAGAGCTGCAGAGGGTCAGAACCACAAACAACATGTAAAAGAGTTTGGTTCctcttcaaaataatttaattacagattttcttttgaaaagagAAGATCAACCGATTTCTGAAGACAATCCCAAGCGCAATAACTTTCATGCATTTGCTGATTACAACAGCTTGGACAACAGAGTCACTGTGTGTTCCCTGTGCTTTTCACATGGAAAGAGTAACAGAACTCCCAACATTGAAAAGTGCTTTaactttaatatttcaaaatggtgCATTGTGTATACATAATATTGTTAGAATAACGAACCCGGGCGGGGCCTTCTACTGTAgccattttgaaaacatgacCTTTTCAAACTTCATACATGCGTCAAAACAGACTTTTTActaaattactttatttctgtAGTAACCCACGTAAACACAGAGTATCCCAGTGTTGTCACTTGGATTATCACACCTCTATGCTTTATTAGCAGCTTCATAGGTTATCTATAACGGTTGTAAAAATGAAACGTCCAACATCTGTGATAGACTCAATGTTCCAATTGCGCTCATTAGGGACATGCATGCCGAGAATGAAAATAGAGTTTAGACTAAACTGAAAATAAGCTTTATACTTAAGTATAAACatcaaaaaatatgaatggacaCGGGGGGAGAATCTGCAacgaacaaataaaaaatacaacgCAATCACTGAACTagagagaaatgtaaaattcaTGTTTAACAGATTAACCTTTgtgtaaaaacatacatttacttCTGATGAGCagtttcagtttaataaaaagaGCAATTTGCTAGGAATGGGAAATTTGTAGTATTTGTAAAAGGCACTCTAAAGTTGTAGTATTCCTTGTTGCTGGTGCCAACCATCACTGATATGCAATTGAGAAAGACATAGTGCCTGTAACTGcattgtgtgactgtgtgctgCATTATACGTGTTGTGCTATACAGGACAGCAGGCAAATGTTTTAACTATGTGCACAAAAGATACCAGTCATTTCTAGGAAGAAAtactattaattttaaaatcgaTTTATTTTGCCAGCATTCTTTTTCTTATTAGATTTCATAGTGCAGACTTGTATCTTTAGGGTCACCTTtaaaaacaggattttttttaaaaaattttGAGCTACAAACTTTATGGatatttatcaaattattaaaaaaatattagttcCTGAAGttttaagcataagaaaattagttttttgagtgccttcataaaaaaaaaaagttacagcGTTTGGTGATAATTCACTTtagatatattatatacttagTAGTGCTTCTGTGGACAATACTGAATAACCAATCTCTCTTGacttttcttataaatatttcCATAAGGTTTCTCAGTACTAAAAATACTTtaccaaaattaaatgtttcagactcatttgttttttgtggggATATGCCCACATAATGTACATTTGGTTTCTTACAACAAAATGCACATCACTATAGAGAACTAGTTTGAGCCTGAATATAAAGAATGATTACAAGTGCaggataaaacaaatactactaTTTCAAGGGAAATACCATTTGTCATGAAGTAAAGTAACACACCGCTCTTTGGTTTTCATACAAAGAATAACAAAGAACCTGAGGGACTTGCTTAGAGGTCCTCCCATCTTTTCTGTAAATCAGTTTTATGCAAATTAGTACTTGTATTCATACATTAGTGTtggtttctttcattttttttaaacagatactTGCAGTAAAGGTGTCATGCAATTTTGCAAGTGAATAAGATGGTAATTCCAAAGGAACTATATTTATGTTCGTAAACTGGTACTCATAAGATTAATTTCTGAtagtttgttctttttataaatgtaactaATTCCATAAAGATTGACAAAAGTGGGATATTAACTGATGGGTTGCATTCTCcaaatgcaatataatgtaTGGAGCTGAATATCTATCCCCTAGAGAAAAAATTCAGTGCAGTTTAGCAAAATTCAGATTTTGCAACAATTGTTCTCAAACACCTTCAGCATCAACTGTGCATCAATTTTCTAGATCCTATAATCCCAGCGTCACTGTGGGATTAATTAAAAGTCTTATAAAGGCAATATTGCCTGAAATAATAACCACATAAAATGCTATAGAGGTGTgacctgtttaaataaaactttacTATAAAGATTAAatctcatatatatttttttcctccacaagGCATCTATATTTAACTATGAGTCCCATGTAAATTTGGGAGTCAAAATAGCAACTTTCTGATACCTTATAAATTCAGTAACATAAGTGATGATGGTAATTTAAATAGCAAATTGACTTACTTTTAGATTACGCTGTGAACATTTCTGACAATTTCTAGTTCACCCTTCAGTAACTGTTCAAAGTTCAAAAGCTGGAGAGACGTTTAGTAGAAGCTTCCAGTTATGGGCAGAAATCAAGCAAGACGAGGATCAGTTACAATACCAGACCACAGAGTGCCACCACATCTACGTACAGTGAAGGTGTCAAGAGGCAGAGCAGTGACCCACGAGAGACCTCTCCGCCTACACTGACCTTACCACCCATTCTCAAGACTGAAGCACCCCCTGCTCGGGCCACACTGTGTGCCCTGTGTTACTGGACGCAGCAGGAAGGGATCTCTGCACAGCAGCAGGCAAAGGAAGAGGAACCCATGGCTTTAGGAGGGATGAGATCCAGGTCCTCATCATCAGGGATCTCATCCAGTCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31876 lncRNA downstream 5337 25207774 ~ 25247379 (-) True G25415
TU31874 lncRNA downstream 6786 25207774 ~ 25245930 (-) False G25415
TU31834 lncRNA downstream 263662 24988845 ~ 24989054 (-) True G25387
TU31821 lncRNA downstream 270577 24981934 ~ 24982139 (-) True G25375
TU31671 lncRNA downstream 710558 24498365 ~ 24542158 (-) True G25248
TU31916 lncRNA upstream 195402 25451763 ~ 25452022 (-) True G25446
TU32026 lncRNA upstream 797403 26053764 ~ 26069317 (-) True AMCG00007687
TU32027 lncRNA upstream 797403 26053764 ~ 26070848 (-) False AMCG00007687
TU32121 lncRNA upstream 1742945 26999306 ~ 26999546 (-) True G25615
TU32123 lncRNA upstream 1772610 27028971 ~ 27029294 (-) True G25617
AMCG00007667 mRNA downstream 245886 24989512 ~ 25006830 (-) True AMCG00007667
AMCG00007668 mRNA downstream 273379 24966872 ~ 24979337 (-) True AMCG00007668
AMCG00007666 mRNA downstream 306920 24934308 ~ 24945796 (-) True AMCG00007666
AMCG00007661 mRNA downstream 442249 24805791 ~ 24810467 (-) True AMCG00007661
AMCG00007662 mRNA downstream 450338 24799840 ~ 24802378 (-) True AMCG00007662
AMCG00007677 mRNA upstream 66727 25323088 ~ 25334806 (-) True AMCG00007677
AMCG00007678 mRNA upstream 83001 25339362 ~ 25355884 (-) True AMCG00007678
AMCG00007679 mRNA upstream 103418 25359779 ~ 25362397 (-) True AMCG00007679
AMCG00007675 mRNA upstream 108676 25365037 ~ 25380395 (-) True AMCG00007675
AMCG00007676 mRNA upstream 133828 25390189 ~ 25454403 (-) True AMCG00007676
TU31562 other downstream 984795 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 1280051 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 4780012 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 4920905 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 5329563 19915146 ~ 19923153 (-) True AMCG00007487
TU31883 other upstream 7971 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 374434 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 9613074 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 11983728 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 12238550 37494911 ~ 37499392 (-) True G27416

Expression Profile