RNA id: TU31916


Basic Information

Item Value
RNA id TU31916
length 260
lncRNA type intronic
GC content 0.42
exon number 1
gene id G25446
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 25451763 ~ 25452022 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGTGTTTGATACACGATTCATACATTATCTCCTTGCTTGGAGCCATGGTAACTCACTTACCATACTTTCGTCCTGTATTCTCTTTAAGGCTCTCCATTTAAAATAACCGACAGCTGAGTGCCCAGCCTATTAGCTGCAGATGCTCTGATGAGAAATCTGCAATTCAATCTGATATGTGTGTTCAACATTGTGAATAAAGCCAAGGTTCCTTTTTTCATCAGCATTTCCCCTGCTTGAACTTCTCTGTTCTTGCCCGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31882 lncRNA downstream 195402 25252716 ~ 25256361 (-) True G25421
TU31876 lncRNA downstream 204384 25207774 ~ 25247379 (-) True G25415
TU31874 lncRNA downstream 205833 25207774 ~ 25245930 (-) False G25415
TU31834 lncRNA downstream 462709 24988845 ~ 24989054 (-) True G25387
TU31821 lncRNA downstream 469624 24981934 ~ 24982139 (-) True G25375
TU32026 lncRNA upstream 601742 26053764 ~ 26069317 (-) True AMCG00007687
TU32027 lncRNA upstream 601742 26053764 ~ 26070848 (-) False AMCG00007687
TU32121 lncRNA upstream 1547284 26999306 ~ 26999546 (-) True G25615
TU32123 lncRNA upstream 1576949 27028971 ~ 27029294 (-) True G25617
TU32126 lncRNA upstream 1617864 27069886 ~ 27070099 (-) True G25620
AMCG00007675 mRNA downstream 71368 25365037 ~ 25380395 (-) True AMCG00007675
AMCG00007679 mRNA downstream 89366 25359779 ~ 25362397 (-) True AMCG00007679
AMCG00007678 mRNA downstream 95879 25339362 ~ 25355884 (-) True AMCG00007678
AMCG00007677 mRNA downstream 116957 25323088 ~ 25334806 (-) True AMCG00007677
AMCG00007667 mRNA downstream 444933 24989512 ~ 25006830 (-) True AMCG00007667
AMCG00007684 mRNA upstream 178770 25630792 ~ 25631490 (-) False AMCG00007684
AMCG00007683 mRNA upstream 201698 25653720 ~ 25658719 (-) True AMCG00007683
AMCG00007689 mRNA upstream 220583 25672605 ~ 25681857 (-) True AMCG00007689
AMCG00007688 mRNA upstream 411000 25863022 ~ 25895601 (-) True AMCG00007688
AMCG00007687 mRNA upstream 608907 26060929 ~ 26067535 (-) False AMCG00007687
TU31883 other downstream 186812 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 1183842 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 1479098 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 4979059 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 5119952 20331513 ~ 20331811 (-) True G24217
TU31949 other upstream 178773 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 9417413 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 11788067 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 12042889 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 12115595 37567617 ~ 37569284 (-) True G27437

Expression Profile