RNA id: TU32052


Basic Information

Item Value
RNA id TU32052
length 5420
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G25562
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 26136767 ~ 26142288 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGCAACACGCCAAAAGATATACATAAGCTATGAGAGCTCTTCTCCATGTTGTGGGTCTGTTATAATGTAAACCCCAAAGAAGCACACTTCAGTCTTATAGCTCCTTCTGGGTCGTGGTCAACAACAGTTATGCACCTTGACACATTGCACATTGACAAACTAGTGAATAACAGATGGAGAACTGTTAGTTTTACTAGTAGACTCCCCAGCCAAATTCCTAATCAGTAGTTGTTGACCTTTTTCCTGTTATAATGgaggtgggaaaaaaaatactgtacagaTTCTTATGTGCAAAACTTCTCTCCCCAAGGTGCTGAAAAGCTCATGTACAAAGCTCACTGTCTATGTACTGAGCGCTCAAATATAAAGCATCAAATGTGACATGTTcaaaagaagaaatagaaaaaaagaaaatctgatgcatttttgtATCCCAAAGGTTTTTTTTCTGGCTAAGAGCTCTCCCATATTAGCTCacagctttaaaatacaaacagcaAAGCTTGTTTAGAAATGGCACTAATGTGGTCTTCCCTGCCTTTTAGGCAGTCTTGTACATCTGGTACTAgtgatatatactgtatatgtattatcaTACCTTCAAATATTGACTCTCCAACAATGGACAGCCCCAGTGCATTCCACACATGTGTGACTCCTCAGATATAGTAGTAACAGCAGTAGCCCAGGACCTCATTTTTAGACTCACCCATAGAcctgaatttgaaatgtattattagaaaAGATTAAATCAAGTACAAGAGAACTAAGTGAGGCTGGGTGTGAATGGTAGCTACTTGTTTTCAAGACTATCACCACATGATAAcccatatattttacattttaaaattgacaaaagtTCTGCTTATTTCGAGCACATTCCTGACCAAATTCAGTCCATCTCATACCAGCCAGTTGCAGCTCAGCCTTGTGAGGACACACTGAGATGAAAAGCTCAGTCTGATAGATCTGCATGCAGGAGGAGTCCATGGACAACCCTGGCTGTTACTAGTAGCCTTTTATCACCGCATGTGTCCTATCCAGCATCATCATTTTGCAGCGGTTGGCAATCTGTAGCACATTCTGCtcactttctgtttctttctttttctctaaaacaaaatataatatagccaAAACACTAAGTGTTAAATATTACCAAATAAGACACAATAACTTCCTAATGTTTGGAGAAATGCAGACATTCACAGAGTATTGATTTGCTCTTGGGTGGGTAAACACCCTTTGTGCACTAGAAGCCTCTAGTTAAGAAAGCAGTTTAGAAAACTTACAGGATGAACTACAAGTCTGGAGGATTGGTGTGGCCTTAAGTGGCTGGCTGCAGTAAGTAACACTAGTTGTAGGAGGTGCGGCTGAGTGGTAAGGGGTGACAAGACAGTGGTACACATCTAGTAACCCAAGGCCATCAGATCTAGTGGTTacaacacatttgtgttttaaaatagtcAATAATCTCATTACAATCAATGAGGTGAGTGATGGAACGGCTAACAGAAAGCTAATTGCTTATGTGCTTTCTGGGTACCTTATGCTCGAATACAAACAAAGTCAATTAACCCAAGATCTTGCATATTCATAATAGAACTGTAATGTATTCTATCCTGACCAACAAAGGAAAAATGGCAAATCTAGTTTCTGAAatacctttttgtttgtttttgccgaGCAGCAACAAATTCCAAGCTTTATGTCCAAAAGGCTTGGTTACGAACTCCGTTGAGGAGTGGTTTTACTAGCTGTGCCAACTTCCTCAGTCCAAACCACCTAAAGATAGAAGAAATCAAAACCAGGCAGTCCCTGAAACACATGTCCTAAGTGGCCATTATCTGTGTATATTCATCCTGACACCTCGCTGCATTAAACAGACACCTTCCTGCGGTTTTCTCGAAAGTGACCCTGGCCCCACTTATCCTCCTCAAATGAGAGGCATGTGCGTGGCATTACATGTCAATATGTGCCAAAAGGAAggaggggaaaagaaaacaccaAAGTTGCATATAGTAATATAAAGTACATACAAGATCAATACTGTCATTTACaaagttaaaacatttacaataattgcACATGTATCCAAATTAGGAGGAGTTGTACCCCATCCCCACTCACTCATTGGTACGAGCATCAGACGGAGGAGCTGTTCTGACCCAAAATAGACACCTGCTTTCAATCAAAACTTCCAAACTCTGTCGGAGATCTAGGCCCACAGCATGCAAACCATTGTCATAGCAATTCATATAAGGCAATTctcttgatttaatttagagGAAAGATTGATGCGTAGTATTTGAGAAAGGCTTTACTGCCTTGTGGCTTTATTGTTTGTGTATACTATTATAATAAGGGCACTTCAGTTTTTCAATGCTAATTAAAACTCTTGTTTACCTGATGTCTGTTGATTGCCACTTTAAAatcaggagaaagaaaaaatttGAGGGTCAAACAACcagatttcatttttcagtAATTATAGTGATAATTCAGCTTGAAAATAAAGGTGATCTTTGGTTATTTATCAATCTCTTCCTATTCTAGAGAAGAGTTAAACAAGGATGATGAAATAATTAAGTTAATCCTGcattaatagaaaatgtatgaatgcTGGTCTGGTAAGAACAAATTgatatattaacaatatatattaaaaatataattatgggCAGGCAAGTAAAGATTACTTTACTTTAAACAAAGTGATGATAAAAGTTCTACATCCATCATTaggttattatgattattttaataccGAACCACAGATCGGTACGTTTAAGATGTGCATAACGTAACCTTAATAAACACTATGGTTCACTATAGACAGGTCAAAATCCTTTCTGATGTCTCAGCATCTTAACCAgactcaattaaaataattaaacggTGACACGCTTGTGGCATAATTCTTCTTGAATCTAATTCATACTTTTTAAGATTTCAATAATTTGTCCAGCCTACCGAGACAGATTACATGCAGGAACCATTGTACATTCATTCAGCTGATCGTATTTCTTCACCGGTgtgcatttatttcctttcagaaaACATATCGATTTATGCagcttttttaaagaaaatgttttgagcTCTAGACATTCTGAATAGAAATCTTCAAATGCATAGCCTATTACTTGAATCTGCTTGAGAGGACATTTCTGGTCAGAACAGCTCAGCTCATGCCAAGCCCAAGGACAAACTGAACACTGGGGAAGAATGGGGAAACTATTAGTGAGATTATGTGCGCTGCCCTCCCAATTTAGACATTTATGATAATATGGATTAAGCCATAACCATTTCCCATTCCCCAAGTTCCCCATTTAAATGAAAGCTTTCATATGAAGTTACAGCTTTgcttgtattatgttttttctttaaacatagGTGTTGAATAGATGGAGGATTCTGGAACTAGTTAAGCTTTGTAAAGTGAAATACAATGGCCTGAAAAGGCAAGATTGTTCATGCCACAATACCAGAGAAATAATGAAGAGAAAAACTAATGGTAAACCAAAAACAGCGCAATAGAGTGAGGGCTGTATTCATGCAGGCTAATGGACTGCACATTTTAGTTGTGTTGTACAaccccccttttctttttcaagtttAAATCGAAGTATGTGGTTCCCTGAGAGCTGCAGAGTCATCTTCTTTCTGTTCTGAACTAagatcttaattacttaattgggcTAATTATTTCCTCAATTGgacattgaatatattttcaagaTCTCCAGAAGTAAATGCACTTGATTTTAACTGTACCTAAATAATCATTTTGAGGTCTGGAGAGAAGCATTAATTTGTCCAATGAATCAAATAATTACACCAGTTAAGTAACTGAAACCCCAGAGACTCTGTCGCTGTCTAGGATCTGGGTTTGAGACTTCTGTGAAGTATCAtttagcaaatgtatttttcattggtTAAGGAAACTAAGTAATACTAGGGAATTACTCTTACTTTTTCAATACAGCCCAAAAAGCTATGCATTGAAAGAGAGATGAAGAAATGTGGTGGGTGATGTTTTTCCAGACAGTTTTCCCATTtttatgaaggaaaaaataattttggtGGCTTAGACCATTGGTAAAAGTAAAATCACTTGGGTCCACTGCAAAATGTCCTACTATGTCTagaagtttgtttgatttgcatGGTCATTGTGTGAGGTGGGCAGCAGGAGTGTGAAGGCAGGGAACAAGTGACTGAGTTCAGTgatgttgctgctgcttttgcTGCTGCAGGATCTTGACAACACGACTCAGAGAGTCTGTGGTGGCGAAGGCCAGGTACTGACAACACAGCCAGTCCTCCAGGCTCACACCACAGCCAGCATCTAGTTGCCTCTCTGTGGCCCGGCCCAGGACTGGCACTCAGAGACTGGAAGAGGTCCTCTCTCGGACCCCACAACAGACACTGCAGGCAGGCCCGTGCATCTGTGATCTGTATGCGCTCAGAGGGGTTGGCATTGAGCAGTAAGCTGGCCAGCTGCTGTAGGCCCTGGGAGTACAAGGAACGGGAGGGTAGCGGAGGCAAGTCTGCCCGGGTGTACTCTTTCTCCTTCAGCTCGGGGGTCTCCTCGAAGGGATTCGGCTGGTGAAGCATTTCGTAGATGAGAATCCCTGTCTGGAACTCATCACACTTCTTGTACTGTGTTGCCGTGATGATCTCTGGAGCCAGCCTGCACTGATCCTTCAAGACCTCAGGGTCCACCAGCTGGCTCTTCTGCTTGGCTTGGGAGAAGTTGCTGATTATAAGCCGGGCAGGGCAGGCTGAGTTGGCAGCAGAAGTGACCATGCCAACTccactgctgctgttgttattgGGCTCCAGCACATCCAAGTTCCAGGGGTTTCCTGGTTGGCACTGCACTAGGAGCAGGTTCTCCAGCCGCAGATCACAGTGAGTCACATGGTAGGGCTTCATGTGCTCGAGGCCCGAGCAGAGCTGCAGCAGGAGGAGACAAACCTGACGTTCGTAGAGGTCTGGGTTCCTCTCGTGCCGTGACACCCCCTCCCTCACAAAGTCTGCCACGGTTTGGTAGGGCACCTCCCGGGTGATCACAACTACACGGCTGCGCAGTTTTCCACAGGTCCCAGTGCCACCTGGGTGTCCTGTGGCTTTTGAACTGTGGCTTGGATTCTTGGGCTCTGTTGGTTTTTCGATCTTCTTTTTGATCTTTGTGCCCTGCTCCTCTGCTTctttttcatcctcctcctcctcctcttcctcaggaGTGCTAGGGTCTTCCCAGGGCAGGAGACGGACTGGCACATCAGCCAGGAAGTGGCCACAGTCCTGCTGGATGTTGAATTGTACAGCCAGGCTCTGTCTCACAGCCAGACTGTGGAAAAACTGCTGCTGCGTCTCCTTGACTTTGCTTTTGCAGATCTGTAAGTGAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32051 lncRNA upstream 2190 26134361 ~ 26134577 (+) True G25561
TU32014 lncRNA upstream 75521 26053701 ~ 26061246 (+) True G25531
TU31915 lncRNA upstream 684974 25451533 ~ 25451793 (+) True G25445
TU31861 lncRNA upstream 815742 25315787 ~ 25321025 (+) True G25405
TU31813 lncRNA upstream 1183439 24953125 ~ 24953328 (+) True G25367
TU32065 lncRNA downstream 120539 26262827 ~ 26270720 (+) True G25574
TU32092 lncRNA downstream 171075 26313363 ~ 26313565 (+) True G25588
TU32138 lncRNA downstream 1048881 27191169 ~ 27191379 (+) True G25631
TU32154 lncRNA downstream 1111813 27254101 ~ 27256998 (+) True G25645
TU32155 lncRNA downstream 1111930 27254218 ~ 27256998 (+) False G25645
AMCG00007692 mRNA upstream 5757 26118096 ~ 26131010 (+) True AMCG00007692
AMCG00007690 mRNA upstream 21159 26096726 ~ 26115608 (+) True AMCG00007690
AMCG00007691 mRNA upstream 53346 26070759 ~ 26083421 (+) True AMCG00007691
AMCG00007686 mRNA upstream 100403 26019814 ~ 26036364 (+) True AMCG00007686
AMCG00007685 mRNA upstream 428629 25698223 ~ 25708138 (+) True AMCG00007685
AMCG00007696 mRNA downstream 1017203 27159491 ~ 27179372 (+) True AMCG00007696
AMCG00007698 mRNA downstream 1072482 27214770 ~ 27226777 (+) True AMCG00007698
AMCG00007697 mRNA downstream 1093706 27235994 ~ 27253888 (+) True AMCG00007697
AMCG00007700 mRNA downstream 1120217 27262505 ~ 27280545 (+) True AMCG00007700
AMCG00007701 mRNA downstream 1175251 27317539 ~ 27324818 (+) True AMCG00007701
TU31514 other upstream 1942286 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 2943246 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 3853809 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 5069984 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 7080634 19051342 ~ 19056133 (+) True G23893
TU32400 other downstream 1941534 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 2310721 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 2860807 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 3623540 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 9468828 35611116 ~ 35620801 (+) False AMCG00007873

Expression Profile