RNA id: TU32123


Basic Information

Item Value
RNA id TU32123
length 324
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G25617
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 27028971 ~ 27029294 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agctgaaggttcgagttgccaaacgtcagccttgaaaccttaatgacttggagaggatctgcaaagaggagtgggacaaaatccctactgagatgtgtgcaaacctggtggccaactacaagaaacgtctgacctctgtgattgccaacaagggttttgccaccaagtactaagtcgaaggggtcaaatacttatttccctcattaacatgcaaatcaatttataacttttttgaaatgcgtttttctggattattttgttgttattctgtctctcactgttaaaatacacctaccattaaaattgtagactgataatttcttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32121 lncRNA downstream 29425 26999306 ~ 26999546 (-) True G25615
TU32027 lncRNA downstream 958123 26053764 ~ 26070848 (-) False AMCG00007687
TU32026 lncRNA downstream 959654 26053764 ~ 26069317 (-) True AMCG00007687
TU31916 lncRNA downstream 1576949 25451763 ~ 25452022 (-) True G25446
TU31882 lncRNA downstream 1772610 25252716 ~ 25256361 (-) True G25421
TU32126 lncRNA upstream 40592 27069886 ~ 27070099 (-) True G25620
TU32167 lncRNA upstream 224935 27254229 ~ 27257033 (-) True G25655
TU32217 lncRNA upstream 324674 27353968 ~ 27355254 (-) True G25697
TU32249 lncRNA upstream 328437 27357731 ~ 27370519 (-) False AMCG00007704
TU32258 lncRNA upstream 400463 27429757 ~ 27540936 (-) True G25726
AMCG00007695 mRNA downstream 548093 26479031 ~ 26480878 (-) True AMCG00007695
AMCG00007694 mRNA downstream 756521 26262988 ~ 26272450 (-) True AMCG00007694
AMCG00007693 mRNA downstream 867457 26136652 ~ 26161514 (-) True AMCG00007693
AMCG00007687 mRNA downstream 961436 26060929 ~ 26067535 (-) False AMCG00007687
AMCG00007688 mRNA downstream 1133370 25863022 ~ 25895601 (-) True AMCG00007688
AMCG00007699 mRNA upstream 170349 27199643 ~ 27212764 (-) True AMCG00007699
AMCG00007706 mRNA upstream 264133 27293427 ~ 27307131 (-) True AMCG00007706
AMCG00007705 mRNA upstream 295407 27324701 ~ 27334387 (-) True AMCG00007705
AMCG00007704 mRNA upstream 328441 27357735 ~ 27370382 (-) True AMCG00007704
AMCG00007713 mRNA upstream 489244 27518538 ~ 27532721 (-) True AMCG00007713
TU31949 other downstream 1397379 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 1764020 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 2761050 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 3056306 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 6556267 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 7840141 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 10210795 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 10465617 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 10538323 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 10541663 37570957 ~ 37571488 (-) True G27439

Expression Profile