RNA id: TU32170


Basic Information

Item Value
RNA id TU32170
length 1454
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G25658
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 27280657 ~ 27282110 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGtggaattaaaagaaatgtagtgcagcatttcttgtaaaataacaaaagtcaGGCCACCCATTGAGGTTTCTGGCCACTATGTAAAATTGTATATCTTGTGAAATGTCAGATTTATgacactataaatatatataaatatatatcacaatCGCAACCAAGCCCTGGCCGCCCTGGTACAGTACCTACGAAGTTGCTGGCAATGCCCAATGCCAATACACCAGCTTTTACACACAAACCAAGAACAATGAGAATGGACTACCCACACACTGCTTacagttttgtaaataatatgtatatagtgtcaaaccttttttttattacagagaTCTGCGTTGATGTGCTAGCATACTTTACAAGCTTACTGTGTACTTTAGTGAGAGGTGGCTTAAAGGTAGtacttataaaaaaacaaaagaaaaacaaacaaaaaaaaaatagcaagtttattacagtttttaccAAAGGAAGTTGATTTATAATgatagtttttcttgttttccttttttgtgtgtttttgtttttttaagctaaagaaatgttaatttgaTAGTAGAAATATATCCAGGATTTttgaacaatattttttatatcattaaaacaaaaaaagaacaaaaatgtttttgtgactAATTGTCCAAACTCTTCAAATTGTGAGGTAAGAGTTTGGCCTTTATTTCATGCTAAACTGTCACTGCCGGTTTGGATGTATTGAACATATTTGACAGAACAGATACTAATGAAATATCAGGCTCCAGGTGTACAGAAATTCTTTCTTTAAAAGACCATTCAGCACTGGAAAAGTTATACTTTTCTATAGCACCCTCTTGTGTATAGTCTTTCTATGTTGTTAAAATATGGGATTGAACAATGGCCTCTCATTTAAGAAACCCTGGATACATTTCTGCTATGAATAttcatctgcatttttaaaggagaaaaaaagagaaactgcaAAATGTCACCGCATGATTTTTCTGTGGATCATCATGGCCCCtttatttcaactttatttaaaaaataataaaaaaataaataaaattgaaatttgtagCAGATGGACCTAATATCTTTGGCAAGGTCTCCAGATCCCAGGCTGGTCAAACCCTATTCATCAGGGGTAGGCAATTGTTGAGGGGTATAGTTCATCTACCTCTTCAGgacaaacacacatactgtGAACTCCTTATTGTAGAATAAGTGTAGGGATGCAGTTATGCAAATACCTTtgaacaagacaaaaaaagagtGTTGTGTGTTACTGATCTTACCTgatgtacattttgtaagtgCTGCATAGgttctaattttaaatgcagtcaTACTGGTGAAGGAATTCTAGATGCTAGATTTGTTTGAATTACATCCCTTAAATTACTTCTGATCTCACTTTTCCACATTAAAGTTGTCTTTACAAGTTGAATGGCTTGGTAACTAATCCTGGTTCTAATAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32154 lncRNA upstream 23659 27254101 ~ 27256998 (+) True G25645
TU32155 lncRNA upstream 23659 27254218 ~ 27256998 (+) False G25645
TU32138 lncRNA upstream 89278 27191169 ~ 27191379 (+) True G25631
TU32092 lncRNA upstream 967092 26313363 ~ 26313565 (+) True G25588
TU32065 lncRNA upstream 1009937 26262827 ~ 26270720 (+) True G25574
TU32191 lncRNA downstream 21738 27303848 ~ 27307066 (+) True G25674
TU32194 lncRNA downstream 46837 27328947 ~ 27330202 (+) True G25677
TU32219 lncRNA downstream 73764 27355874 ~ 27356077 (+) True G25699
TU32235 lncRNA downstream 284585 27566695 ~ 27569353 (+) True G25709
TU32236 lncRNA downstream 284585 27566695 ~ 27569297 (+) False G25709
AMCG00007700 mRNA upstream 112 27262505 ~ 27280545 (+) True AMCG00007700
AMCG00007697 mRNA upstream 26769 27235994 ~ 27253888 (+) True AMCG00007697
AMCG00007698 mRNA upstream 53880 27214770 ~ 27226777 (+) True AMCG00007698
AMCG00007696 mRNA upstream 101285 27159491 ~ 27179372 (+) True AMCG00007696
AMCG00007692 mRNA upstream 1149647 26118096 ~ 26131010 (+) True AMCG00007692
AMCG00007701 mRNA downstream 35429 27317539 ~ 27324818 (+) True AMCG00007701
AMCG00007702 mRNA downstream 52815 27334925 ~ 27348351 (+) True AMCG00007702
AMCG00007703 mRNA downstream 69113 27351223 ~ 27355475 (+) True AMCG00007703
AMCG00007707 mRNA downstream 147792 27429902 ~ 27448438 (+) True AMCG00007707
AMCG00007708 mRNA downstream 195901 27478011 ~ 27504969 (+) True AMCG00007708
TU31514 other upstream 3086176 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 4087136 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 4997699 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 6213874 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 8224524 19051342 ~ 19056133 (+) True G23893
TU32400 other downstream 801712 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 1170899 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 1720985 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 2483718 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 8329006 35611116 ~ 35620801 (+) False AMCG00007873

Expression Profile