RNA id: TU32236



Basic Information


Item Value
RNA id TU32236
length 1156
lncRNA type inter_gene
GC content 0.46
exon number 4
gene id G25709
representative False

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 27566695 ~ 27569353 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TGGTAGGtttggtaaaaacaaaaaacaaatgtttaacaaaaaatgggaacttttattttgttttacattaaaaaagcagGTAACCGTTGGACAATCCCATTCGGAATGCCTTTTGGAAGTGGACCCGTGATCTTTTGCATGGTGGTCAGGCTGTTGTTCGATTTAAAGATGGTGTCCTTCTCAGTTGTGTCAAGTACAGCACAGAGGACTTGAGCGGTGGGGACTTCTCACAGAGGAACACCTCCAGAAATTAGGTTTTAACCCCCAAACCCAAAAACCTATTACTAGTTACTCCTTTGCAACAGCAAATGGTTTCTCCACATCAATTTTCCCACTTTTGTGAATCGTCACATCTTTCAATGGCTTGTCCCTGCCATCAGTCTTAGTCGCCTCAATCTTCTTAACAACATGCTTCCCATCCAGCCAGGGTGTCTGCACAGTAGTGATGAAGAACTGAGAGCCATTAGTGTCTTTTCCAGCATTAGCCATGCTCAGCCAGCCAGGTCCGTAGTGCTTCAGCTTGAAGTTCTCATCAGGGAAACGATCTCCATAGATGCTCTTCCTCCTGTGCCATCACCTCTAGTGAAGTCTCCACCCTGAATCATGAAGTCCTTGATGACTCGATGGAACTTGCTGCCTTCAAAACCAAAGCCTTTCTGCAGGTCAAGAAGTACGGTCTCACATTAAGATAAAGCAGCAAAACAGGGAAAGTATTCAGACAAATCAAGTTAAGCTAGTAAATTGAAGTTACATGCATATTTCCCGATACAATAGGGAATTGGTTATAGAACTGCACTCGCCTCATTTGTTGACAATGCGACGAAGTTTTCCACAGTCTTTGGGACGGTTTTCCCAAACAGACCAATTACAATCCGCCCGACATCTTCGTCTCCGATTCGGATGTCGAAAAAGTACCTTGTGCGTGACTTTTGgccctttctttttctcatcTGCAACGGATCCGCTGGGGAACAGCAGAAATATCACCGACCCGGCGATAATCGCGACAGCAAAGAACAGCTTCATCCTTCTCTCTAGGATCCGAACCATGAAACGGAATGAAGTGAAGCCGTGGCGGAGATAAAAGCAGCAATGGGCCCGGAAAGCGCACCGAGTATCCGGGGAGGAGACTGCGATGCGCTGCAGGCCTGGTTTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU32219 lncRNA upstream 210618 27355874 ~ 27356077 (+) True G25699
TU32194 lncRNA upstream 236493 27328947 ~ 27330202 (+) True G25677
TU32191 lncRNA upstream 259629 27303848 ~ 27307066 (+) True G25674
TU32170 lncRNA upstream 284585 27280657 ~ 27282110 (+) True G25658
TU32155 lncRNA upstream 309697 27254218 ~ 27256998 (+) False G25645
TU32289 lncRNA downstream 1246 27570543 ~ 27571491 (+) True G25753
TU32393 lncRNA downstream 501049 28070346 ~ 28078121 (+) True G25819
TU32410 lncRNA downstream 535305 28104602 ~ 28109590 (+) True G25827
TU32559 lncRNA downstream 1112874 28682171 ~ 28699741 (+) True AMCG00007754
TU32560 lncRNA downstream 1112874 28682171 ~ 28699741 (+) False AMCG00007754
AMCG00007710 mRNA upstream 49 27553588 ~ 27566646 (+) True AMCG00007710
AMCG00007711 mRNA upstream 16732 27533469 ~ 27549963 (+) True AMCG00007711
AMCG00007709 mRNA upstream 49993 27505666 ~ 27516702 (+) True AMCG00007709
AMCG00007708 mRNA upstream 61726 27478011 ~ 27504969 (+) True AMCG00007708
AMCG00007707 mRNA upstream 118257 27429902 ~ 27448438 (+) True AMCG00007707
AMCG00007717 mRNA downstream 19373 27588670 ~ 27592548 (+) True AMCG00007717
AMCG00007715 mRNA downstream 43375 27612672 ~ 27619156 (+) True AMCG00007715
AMCG00007716 mRNA downstream 67920 27637217 ~ 27656565 (+) True AMCG00007716
AMCG00007714 mRNA downstream 93695 27662992 ~ 27667229 (+) True AMCG00007714
AMCG00007718 mRNA downstream 104465 27673762 ~ 27679214 (+) True AMCG00007718
TU31514 other upstream 3372214 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 4373174 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 5283737 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 6499912 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 8510562 19051342 ~ 19056133 (+) True G23893
TU32400 other downstream 514525 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 883712 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 1433798 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 2196531 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 8041819 35611116 ~ 35620801 (+) False AMCG00007873

Expression Profile