RNA id: TU32258


Basic Information

Item Value
RNA id TU32258
length 484
lncRNA type sense_over
GC content 0.44
exon number 3
gene id G25726
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 27429757 ~ 27540936 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTGTACAAGTaaaaaaaaaagaaaaaaaaaagtttagtttcTTTCCCGGTTGGTGGGTTTTCCCTGCAGTGCCTTAagttgcagaaaaaaataataatatcttgGTGCCGTTTCGTGAAAGACTTCAGAAAAAGGGTGCCCAAGTGAAGCCGTGCTTGAGCCACAGTATCCAAGGATCCCGAAATAAAAAGGTGATTTGGTGTATAGGTGCACTGTGCAGGtgagagaaggggaaaaagaaGCGCTCTTATCTCCCTCGGCTCTTCACATCAAGCTTGTTAGGGCAAAAATtcaattaagaaagaaaaaaaaaaagtgagaacCAGCTCCAATTGAAAGGGGGGTCTGTGGCGTGGTCTTTCTCCTTCTGCTGTCCAATTTGCtgatcaattatattaaaaggcAAGGAGAGTAAGTGGGACTCATGTTGGAGATGGGGCTCAGCTGGGATGAAGTCCAGCCCCCCACACAACCGCATCACCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32249 lncRNA downstream 59238 27357731 ~ 27370519 (-) False AMCG00007704
TU32217 lncRNA downstream 74503 27353968 ~ 27355254 (-) True G25697
TU32167 lncRNA downstream 172724 27254229 ~ 27257033 (-) True G25655
TU32126 lncRNA downstream 359658 27069886 ~ 27070099 (-) True G25620
TU32123 lncRNA downstream 400463 27028971 ~ 27029294 (-) True G25617
TU32282 lncRNA upstream 12561 27553497 ~ 27554110 (-) True G25746
TU32284 lncRNA upstream 21792 27562728 ~ 27563018 (-) True G25748
TU32285 lncRNA upstream 22304 27563240 ~ 27563690 (-) True G25749
TU32286 lncRNA upstream 23103 27564039 ~ 27564709 (-) True G25750
TU32317 lncRNA upstream 121288 27662224 ~ 27666550 (-) True G25768
AMCG00007704 mRNA downstream 59375 27357735 ~ 27370382 (-) True AMCG00007704
AMCG00007705 mRNA downstream 95370 27324701 ~ 27334387 (-) True AMCG00007705
AMCG00007706 mRNA downstream 122626 27293427 ~ 27307131 (-) True AMCG00007706
AMCG00007699 mRNA downstream 216993 27199643 ~ 27212764 (-) True AMCG00007699
AMCG00007695 mRNA downstream 948879 26479031 ~ 26480878 (-) True AMCG00007695
AMCG00007712 mRNA upstream 25231 27566167 ~ 27569541 (-) True AMCG00007712
AMCG00007719 mRNA upstream 126585 27667521 ~ 27672745 (-) True AMCG00007719
AMCG00007722 mRNA upstream 332327 27873263 ~ 27879135 (-) True AMCG00007722
AMCG00007724 mRNA upstream 338324 27879260 ~ 27884397 (-) True AMCG00007724
AMCG00007726 mRNA upstream 516499 28057435 ~ 28063864 (-) True AMCG00007726
TU31949 other downstream 1798165 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 2164806 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 3161836 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 3457092 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 6957053 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 7328499 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 9699153 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 9953975 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 10026681 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 10030021 37570957 ~ 37571488 (-) True G27439

Expression Profile