RNA id: TU32264


Basic Information

Item Value
RNA id TU32264
length 3109
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G25730
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 27438008 ~ 27451511 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAGGATATAACCAAGTTTATTTATAAGCCTGTTGAGTGAAAGATAATGAAACCTGATGTTATAGTTGTTTTCTTAATGGCTAACattatttttagaatatataGTGATTCTCATTCAGTGAAGCAgtgtatatttgtaatacaGTCATCCATTATATCACAACCATGTTTTCTTCTCCCataccatttatttttgctgtgtaCCTGTAAGAACTTTTGCCTGTAGTGCTTTCATTATACATGGGGTCAGTTTTGTCTGTCGCTATGGTGCAAattccacaaaaacaaaacaagtaaattatgtataaattaaaccatttacagcAGCAAACTGCTTGCATCTGAATCGTCAGGcaaatgacttcaattaagcCCTGCTGATTTAAATGGGCTCTGACAGCTTGCAGGGAACAACCACAAATATTTTATCAGACACTTTAATTAGGCAGCTGGCCCCATTGAAAATGGGGGCTTTAAGGAGTCTCTGAATGGGGTTTGCGCCTGGCTGAGCAGGAATGTTTCAGTGTCTCAGAGGGCAGTGAGTACCGGCCAACCCTActgttaatgcaaaagccaCTCATGCAGAAATGATAGGGatgtataattaataatcacatatttaatcattaatttgGTCAGGGAGCAGGGCTTTTACTTTGCAGGGGAAGTGCTCAATGGAGAAGAAACAGCCATTTTGCCACATAGCAGAGGGTTCTACAGCATCCTGCTTTTAGaccacatttcaaaatacatctcTCTCAAGGTACAGCAGGGGGTAAGAAATTCCATTGGCTATCCCACAGACTGGAGTCTGGTATGTTGAATTAAAAACCCAGATTTCCCTGTTGTAATTATCATGATTCAGATATTGTAAACCATAGCTCGTTTGCCTTTAGATTTCAAATTTCTAGGAGATATGTGCTGCAGAAGGGTAATACTCACTTTTCTATTACAAACACTGACCCTTTTTAAGTCAATGAAGAATGCCAAAGGAAGTAGGTTAATGATAAAAAGCTACCAATACAAAGTGAAAGCAGTGGAAGGGAGATGGCACTAGATACAATGCGGCACCCCCACGTGTCTAAAGGTAGTTCAAGGTTTTTCTGAAGGAATACCAAATTGCCCATTTTGAAGCTGACCACCTAGACCTCGCACCCGTTTGAACTTCACAAACCTTTAGCATCTAATACTAGCCCTCACTGGTAAATGAAAACTGTTTTACATTGGTTGAGTAGGTTTAGATTGTTCTGTATGCATTTGATGAATTAGTAACTTCAGACTGCTTGTGTGAATATTAATGTAGCACAAATGGTGAAAAGCCCTCAAAAGCCAGTGACAAACACCATTGTGAAATCACAATAACTCCTTAGAAAACAtacaacacattacatttgcaaaaactTCTATTCTTCATTACTCATCAGAAACAAATGTAGGGATCCTTTTATATATGCAGTTGACccttaatacaatataaatattttatataaaacttgCCTGCACATGCTGAAGAAAAGGTGACTTGAGGTTTGCCTTGCTATAAATCAATAAGGTTAGGAGTCATTAAACTTATGCCAGGCACAGCCCTCTGAGACCTGATGTGAAAATCCAAAGATTTTACTGGAGGGCTGGATTTAAACTCAGAATTTCAGAAGTCGAGGTAGAACCTTTCTGATCTATCATGACCTTCCATGATAGGCTAAACATATGATGGAGCATAGTTCATAGTTGAAGTAGAAACCGGTTTCGAGTTTTTAAACTCCACTGGCAGAATGTAGAATGGGCAGGTGCAGCAGGGTTCCTGAGCAACACAAGGGAGCCCCAGCACTGTAATTGGTCCGATCATTGAAATTTCCTGTCAGTGAGAGGTGACTGAGCTTGCAGGGTAGCAAGTACAGCAGGGTGACGACAGAAGGGCATCACATGACTGTTCCAAGAAGGAAGCAGAGGTCAGTGCACACCTGAAACCAAGACTTGTACATATAGTTAAATGCTCAAGCACAAAGTCAGCACAAGGTTTTTGCAACCATCTATTCTCAGTCATAGCTGGCTTCCTTTACCAACTTTGAGACTATACATCACCATTAGCTGTAAATGAAGACTTAAAGCCCCCCTTTTTCTTACTCTTCAGTGGAAGAAAGCAAAAGCTGTCAAATataagtttaaacattttttccaATTAACTCCTTTTGTAGGGGATTTATATGAATAAAACCCTCAGCCTTTCAGTGACCTACATTTGACAAGCAGATTTTGGCCATTTTCAAGTTATTAAAACTTAACCAAGATGTAAATGTTAGAACAAAGCAAAGGCAAATTCCAGGAGGTCGTTAAGTACACGTGTAGAAACTGGGAGCTTGTAAAATATGCAATCATCTTCCGAAGCAGATTTAGACCAAACTGAGCGAGAATGAGGCCTTTGTTATGCCTTCTAATCAAAGTGTTGCTCCAGAGACAGGTCTGGTTAGGAAGTCTAAGGGCTCAGAACAAAGCTGATAAAGATGGTTTTGAAAATACGGAGTAAAAATCTTTTGGCAAATAAGATCAGAACTTGAGTACACAACAGAACACAGGATTCTGGGTTGCTTCCAGACCATCTTGCTTATAGCACAATGAGGCTCTCACTTTGAAATTAGTGCTgggatagacatttgaaaactactgggtgtatttttttttttttttttttaaaaggaatttaaaatacagcattagCCATGTTAGGTGTTGCATTGAGATCTCAATATGGGCAAGCTTGAATGCAGTTAAGCTAAATTAAATCAGAACAGTCAAACCATATTAGCTATACTTCCTCCACATGGCAGCCATTTGATTAACCTAGATGTGTAAAAGATGTATAACTTTTCGCTAAAGCTCCAGATGGAATTTTCAATTAAAAGGGTACTTTGTGCATCCAAGCAGTTTGTTCAACTGGAATGTTGAAGAATCCACTACCTTAGAGTGGATCTCTTGAACATCAGATTTTTCACTTTCAGCTGTGGAGGGGCTGCTCTCAAATTCAGAGCAAGCCATGTCTCCCTTCTCTACGTTGGAAACTATGCTCTCCAcactcaaatgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaca

Function

GO:

id name namespace
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32249 lncRNA downstream 67489 27357731 ~ 27370519 (-) False AMCG00007704
TU32217 lncRNA downstream 82754 27353968 ~ 27355254 (-) True G25697
TU32167 lncRNA downstream 180975 27254229 ~ 27257033 (-) True G25655
TU32126 lncRNA downstream 367909 27069886 ~ 27070099 (-) True G25620
TU32123 lncRNA downstream 408714 27028971 ~ 27029294 (-) True G25617
TU32269 lncRNA upstream 49439 27500950 ~ 27504962 (-) True G25735
TU32282 lncRNA upstream 101986 27553497 ~ 27554110 (-) True G25746
TU32284 lncRNA upstream 111217 27562728 ~ 27563018 (-) True G25748
TU32285 lncRNA upstream 111729 27563240 ~ 27563690 (-) True G25749
TU32286 lncRNA upstream 112528 27564039 ~ 27564709 (-) True G25750
AMCG00007704 mRNA downstream 67626 27357735 ~ 27370382 (-) True AMCG00007704
AMCG00007705 mRNA downstream 103621 27324701 ~ 27334387 (-) True AMCG00007705
AMCG00007706 mRNA downstream 130877 27293427 ~ 27307131 (-) True AMCG00007706
AMCG00007699 mRNA downstream 225244 27199643 ~ 27212764 (-) True AMCG00007699
AMCG00007695 mRNA downstream 957130 26479031 ~ 26480878 (-) True AMCG00007695
AMCG00007713 mRNA upstream 67027 27518538 ~ 27532721 (-) True AMCG00007713
AMCG00007712 mRNA upstream 114656 27566167 ~ 27569541 (-) True AMCG00007712
AMCG00007719 mRNA upstream 216010 27667521 ~ 27672745 (-) True AMCG00007719
AMCG00007722 mRNA upstream 421752 27873263 ~ 27879135 (-) True AMCG00007722
AMCG00007724 mRNA upstream 427749 27879260 ~ 27884397 (-) True AMCG00007724
TU31949 other downstream 1806416 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 2173057 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 3170087 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 3465343 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 6965304 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 7417924 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 9788578 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 10043400 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 10116106 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 10119446 37570957 ~ 37571488 (-) True G27439

Expression Profile