RNA id: TU32286


Basic Information

Item Value
RNA id TU32286
length 671
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G25750
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 27564039 ~ 27564709 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGGAAGCCAGGATGTAGGGGTCTTTGGAAAATCCCACCACCCGCTGATGGAGGAGTCGACAGCTGGAAAACAAGAAGGACCAGATGTTCAGCAGCATCTGAAGCATTAGCAATGTTGTAAACTTGGAGTGTAAATGAAAGGTATTGCTCAAATGCGATATACAAAGCCACAGATTTGCACTTCAAACATCTGTTGTATTTAAATTCATGCTGGGACTGACAGACTCTCAGACACATATAATCTCCTGCCAAAGCTACATGTAAGCCCTTTTGAATCTTCATATACTGTAGCTGGAAATGTAAAGACAGCTAGGCAGAGACAGAGCTGTGACAATGTAGCACCTTCTCTGCATCTACTGTTATTACATGAAAAACTCTGTAGCCCCTCAATTCTAGGCTATGTTTGGATAATTAGAGACATTTCTGATataactgtataaaacaaacaactgacTTTCCCTGAAACAAGAACACTGGCAGCATCGCTCACAGCCCTCACCGCTCCACTAACAACCCTTGTGGACTTGTGCATTTGTAAGGAAAATAAGCAAGTGGGAGGTCATTCAAATTTTAAAGATTCATATTCTCTCAGGTCAGGTCCTGGTCTTTGGGGCCCCAGTGTCGTCTAGTTCTAGTTCCAACTCAGAAAGAATAATCGATGCATAAATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32285 lncRNA downstream 349 27563240 ~ 27563690 (-) True G25749
TU32284 lncRNA downstream 1021 27562728 ~ 27563018 (-) True G25748
TU32282 lncRNA downstream 9929 27553497 ~ 27554110 (-) True G25746
TU32258 lncRNA downstream 23103 27429757 ~ 27540936 (-) True G25726
TU32317 lncRNA upstream 97515 27662224 ~ 27666550 (-) True G25768
TU32318 lncRNA upstream 97515 27662224 ~ 27667072 (-) False G25768
TU32591 lncRNA upstream 1112131 28676840 ~ 28702537 (-) True G25968
TU32595 lncRNA upstream 1131756 28696465 ~ 28699849 (-) True G25972
TU32612 lncRNA upstream 1168055 28732764 ~ 28732994 (-) True G25985
AMCG00007713 mRNA downstream 31318 27518538 ~ 27532721 (-) True AMCG00007713
AMCG00007704 mRNA downstream 193657 27357735 ~ 27370382 (-) True AMCG00007704
AMCG00007705 mRNA downstream 229652 27324701 ~ 27334387 (-) True AMCG00007705
AMCG00007706 mRNA downstream 256908 27293427 ~ 27307131 (-) True AMCG00007706
AMCG00007699 mRNA downstream 351275 27199643 ~ 27212764 (-) True AMCG00007699
AMCG00007712 mRNA upstream 1458 27566167 ~ 27569541 (-) True AMCG00007712
AMCG00007719 mRNA upstream 102812 27667521 ~ 27672745 (-) True AMCG00007719
AMCG00007722 mRNA upstream 308554 27873263 ~ 27879135 (-) True AMCG00007722
AMCG00007724 mRNA upstream 314551 27879260 ~ 27884397 (-) True AMCG00007724
AMCG00007726 mRNA upstream 492726 28057435 ~ 28063864 (-) True AMCG00007726
TU31949 other downstream 1932447 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 2299088 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 3296118 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 3591374 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 7091335 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 7304726 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 9675380 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 9930202 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 10002908 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 10006248 37570957 ~ 37571488 (-) True G27439

Expression Profile