RNA id: TU32318


Basic Information

Item Value
RNA id TU32318
length 2144
lncRNA type inter_gene
GC content 0.44
exon number 5
gene id G25768
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 27662224 ~ 27667072 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctgaattattttttaataccaaGAAAGGACAGAGGAATCCCAAAGGcactataataaaaaataaaaaaatagtctCAGTACAGACATAACCAAGAGTACACCTATTACTGAACAGTTATGTCCAAGGTAAACTAGTTCAAGTATAAAACAAGGATCACTACACCCACTGCATCTGAACTCTTGCTTCACGTGGAGATGCAGGgacaaatgacaaaacagatCAGAAGAGATCAGCACACTCCACTCAGAATCCAAGGCACATCAAAGTAGTACAgctctgcttttattatttaatcctAATCCAGAGCCGAACTTGAAAAACAGACGCATTTCAGCAAACTGCCTTCCAAacctttcaaaacattttgaaaaatgttgagTGTGCAGGTCTTTTTTGATCCAAAGTAAAACTAATTTCCTCTTCATTAATGCACACATTAACTTCTACATTTATTAGTTAACAAACAGCTCAAACAGCAAGGTAAGCGGGTCTCAAACTGAAAGAAGTCAAACTCTCCACACAGTGtacattttttctctttattaagAGATATATTACAAAGGTACGTCTAGACTCCTCCTCTGGGCGTTTTGAAGTTCATTCCGACAGTCGGCTGGGTGACCTGCAGGTTGGACAGACTGCCGAAGTCCAGCTTCAACATTTCCTTAGTATCAGGATCAACCTCAATGATTTCCTGGTCCAAGGCAGGACCTCAGGAACGTAGTtgtccctcctctctctctcctcctcctgcagtTTGATGGAGATGCCTCTGACGGGGCCCCTCTGGATGCGCTTCATCAGATGGGTAACAACCCAGCGATCTTGTTGCGCAGCTTCTTGCTGGGGATGATGGCGATCTCCTCACACACCCTCTTGTTGGTGTGGAAATCATTGCCCAGACGGGTGTAGTACTTCTCAATGATGACCCGGGCGGCCTTTTTCACCGTCTTAGTCCTGACTCGTCCCTGTGGAGAAACAAGGGATCGAATGAGGGAGAACAATAAAAACCTGCAGCTGTGATGGTTTTACAGAAGACACACTGAAGGAGGGGATGCGGCTCTCGCGGGGCGTTCGATTCTTACCTGGTTTAGGTCTCAGGCTACAAACGGTTAAAACCTAATGTGTGCTATGTCTGAAAGATACAGGGTTTGACAGGGACAGTTCCCAACAAACACGGGAAAGCTTTCAGGTCTCTCTCCCTGTACTATCAATGACTGGGCAACGGTGCATACCACAGTCACTTTCGATACAGGGGCACAGTAAATCCGTCTATAAAAGCATGAGGGGAAACTgcagttttattttgatgaCACATGAAGGGTGGCTGGACCTGAATTAGGCCCTGCTGCCCATGTTACATCTTCAAAACAAGTGCTACTGAGCAAAAGTCAACACATTAGAAAAGCAGAAGACCTCCATTACAAGAATTCTGGGCATCAAGGTAAATGATCCCATTTCAAATCCAAGGCTTCATTGGCAAGTCATCACCTGATCCAGTAGCCAGAGATCACATTTCCAGCATGGTACTAACAGTGTGATCTAACCATCCAGGGCCTTTAAGACCCAGCATGACAGACCTCTCTCTCCTCGTCAacttttacacatttcacaCCGTAAACACGACCCAAAAGTGGAGGATCCTTCAATATTCACGGGCATTTTCACCTGCAGCACGCTGCCAGTTACACAACCAGCACGCATACGAGTAAATCACCACAATAAACCCTACACGATGAAGCGACTGATATTTTAACAtgcaagcttttaaaaatatattccagATTCAGACGCAGtctaaacacacatacagtcgCTTAAAATAGATCAGAACTCAAAGATAAAACAATGCACTCAAAATGCCGTCTATAATCCCGGTTTTAACACACAATGCTCGCATTATTAAGGCAGCGCAGAAACGCACACTTCGCCAGTGCAGTTAATGGGGAACGGCGCTCCTTCCGCTCACAGTAAAATGACTTCCCAAGAAACACGTCTTTACTCTTCACCCTGCACCCATTCCCGCCCAATATGTATTCGACATAACGCGTAACTAAATAAGCACCGTGGCCGCCTTCAAGAAATGTCTGGATGGTGGCTGAAATAAAAGGATTGAGATGGATTATGAAAAGAACGAAATCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32286 lncRNA downstream 97515 27564039 ~ 27564709 (-) True G25750
TU32285 lncRNA downstream 98534 27563240 ~ 27563690 (-) True G25749
TU32284 lncRNA downstream 99206 27562728 ~ 27563018 (-) True G25748
TU32282 lncRNA downstream 108114 27553497 ~ 27554110 (-) True G25746
TU32269 lncRNA downstream 157262 27500950 ~ 27504962 (-) True G25735
TU32591 lncRNA upstream 1009768 28676840 ~ 28702537 (-) True G25968
TU32595 lncRNA upstream 1029393 28696465 ~ 28699849 (-) True G25972
TU32612 lncRNA upstream 1065692 28732764 ~ 28732994 (-) True G25985
TU32614 lncRNA upstream 1067040 28734112 ~ 28734449 (-) True G25987
TU32688 lncRNA upstream 1227621 28894693 ~ 28898576 (-) True AMCG00007757
AMCG00007712 mRNA downstream 92683 27566167 ~ 27569541 (-) True AMCG00007712
AMCG00007713 mRNA downstream 129503 27518538 ~ 27532721 (-) True AMCG00007713
AMCG00007704 mRNA downstream 291842 27357735 ~ 27370382 (-) True AMCG00007704
AMCG00007705 mRNA downstream 327837 27324701 ~ 27334387 (-) True AMCG00007705
AMCG00007706 mRNA downstream 355093 27293427 ~ 27307131 (-) True AMCG00007706
AMCG00007719 mRNA upstream 449 27667521 ~ 27672745 (-) True AMCG00007719
AMCG00007722 mRNA upstream 206191 27873263 ~ 27879135 (-) True AMCG00007722
AMCG00007724 mRNA upstream 212188 27879260 ~ 27884397 (-) True AMCG00007724
AMCG00007726 mRNA upstream 390363 28057435 ~ 28063864 (-) True AMCG00007726
AMCG00007730 mRNA upstream 417614 28084686 ~ 28099269 (-) True AMCG00007730
TU31949 other downstream 2030632 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 2397273 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 3394303 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 3689559 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 7189520 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 7202363 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 9573017 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 9827839 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 9900545 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 9903885 37570957 ~ 37571488 (-) True G27439

Expression Profile