RNA id: TU32400


Basic Information

Item Value
RNA id TU32400
length 3277
RNA type TUCP
GC content 0.43
exon number 8
gene id G25822
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 28083822 ~ 28094741 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agcagTATTGAAAATTAACAAATAGTTTGATTGTGCTCAGTATAAAATGAGTTAAACAATAACTGACTTTATTATACATAAATGGCCagtactttattttgtaataatctgtaaaaaaatgtttacttaaaTTGGTATTTTGATCATGGCCAGTTaagtttaatatttcattagatttaaaaattaaaactgcaagTCAGATCTGGGAATGAATCTATGCATAATACACACTGCACTATCTTTAGTCCTGGGGTTTGAAAAAGATGCCAGATCTAACCTGCGCCCCGTTTTACTACCATGCGGACACAGGCATACAGCAAGAACACGTGGAAACTTTAAAAGTTCAATTACAAAATTCAAATCCCTCTTTTGCATCATCTTTCACAGCAGGTGGGTTTTCCAGTCCCCCGTCTTCTGGCCCGTCCATGGGGAACCCTGGATGGTGGTCCTTTCACAGGCCATCATACTCATGCGCGCAGTATCCCGTAAACAGAGGCTGTGCCTGGATGCCGCGCCGAGCAGTCTGCAGCGGAACTCTGTGAGGCGGGGGTACGCCTGGCCCGCACTAGGGGTCTGCTCCTCATCACTCCACAGCCGCTCAGCCACTGCGCACGCCCTCGGCCACAGGCGAGGAGTCAAGTTGGTGGCATCGACATACTCCCCCCACATGCAGGCTTCTCCCCCCATCACCAGCTTCTTCTGCTCAGCGGTGCCTTGAAGTTCAGTGGCTTGACTTCATATGCTTTTTGCCAGTCCTGGCCGTACGAAATGACGTTGAGGTACCAGGGAGAGGAGAGCAGGACCTTGAGCCCCCCGGTTGTGATGTCTTGCatctctgtgctgtactgctcCATGTTGCCCTTCCACACGTGCACCACTGTGTCCTTGGGTACTTGAACGTTGTTGTCAAACACTTCCTGCCACACCACGGCGTTCTTCTTCAGGGTCATTGTGATATTCACGAGTgtTCCAATGTAATACGATTCCAGTTTCCGGTAGTCAGTCCCAAATCCCATCAATGACATAAACTTTTGAATGTCTGGATTAGATTTCCAGCAGGTGAAGTCCACTTCATCCCCTCCCAGATGGATGTAAGAGTCTGGGAAAATCATTGCCACCTCTTTGAAGAGGCTGCTCATGAACTGATAGCTGGAGTCAAGAACAGGGTTCACTGGGCCAAACGTCCCTGAGGGAACCGATCCTTTGTAGCATGGGGTCAGTAAGCCAGGACTGGGTGTGGCCTGGAGTGTCAAACTCAGGAATTACTCGGATTCCACGCATCCTGGCGTGCTCTATAACCTTCTTCACATCTTTGATGGTGTAGATGTGTGTCTGGGAGTGGTAGGCCCCCTTTAAAACAAGGAGCACATAGGCCTACACTCACCATTGTGCTGTACCAGTTTATTTACCTTAAAGTCAACAATTTGTTGTGCGCCTCTCTGGAGTCAAAGTTTAGTATTTGCTATACTTCCAGAAAGCCGATGTGAATGCTATGTTGGAAGtaatattgcagtttaattcagcattttatatagttttattttccatccATTAGGTTGTATAATCCCAACTCCACATCTCTGCTGTACTTTACATGAGATCAGAGTCACAGCGGTCCTCCAACTTTACCTCCAGGACAACAAATCAGTCAGGCCAGGGAATGCGTTCTTTACCCAACATTATGGTTAAAGCCCAAGACTGTCAggatttgtaaattattatttaattctcaTCAGTAATCGTTCGTGTGAATCAGGAATTAGAAATATCCTAGTTGATAGGCAACAGTAGTTCAAGAGGGCAtcagtcctgcaggttttatgCTTACATatacaatttccattttaaccTTTAAATTATTAGTACCTCAAAATTAAGGACCTaagtggaacaaaaaacagaagacctTTTGTGTCTCCAGCGCTTCAATCTCCTGGACCTGATTACTGGTTCACTGCATGTTCcttgtattcagtatttttgGAAAGAGCTGCTGTTGATACCTTCTTACTAAGGTCAGGAAAGGTGATGCTCTGGTATGGGAAGGAGGGATCATCCACAATGTGCCAGTGAAACACGTTAAACTTGCTGTAGGCCATTGCATCCTGTGTAGGAAAAGAAGAGTTTTTTGGTATGATTTTAAGCTACCAAAGCTgctgtgattatttttgttttctcaaaacaTCCCAATACCCTTCCCCCTAACAACATACTATGggaaatgcaaatcaatttaagCTAACTGACACTTATTTTGTACCCTGAGCTGACAAACCTGACAAATCAACATAAGCTTCGATGTAAGAACAAGATAGCGAAGCCCCATTACCAGTGTCTTTAGGATGGTGTGGAGAGGTAAGTAGTGTCTGGAAGAGTCCAGTAGGAGTCCCCGGTGTTGGAAACGGGGAAAATCGGCAACCTCTGTCTTGTTAACATAATACTAAGAGGGGGGGAAAATTCATGTAGTCAGTGCTTTCTGCTGAGTGGTCGAACTTCCAACACACAAAAAGCATCACATATTCTGTCCTTTAAGAATCAACCATCCTACTATGGCTGTAACTGAAAAGGGTTTTACAATATTGATTGATGAAAACACCAACCCACACCATGTTCTCCATTACTCATTCCAATCCATCTCGGCAGACTGATCACTGGTGTCAGCCCAGGATTCAGGATTTGTTGCACTGTCAAAGAATGTGCTTTAAACGCCGAGTGCAAGGTGCTCCTCTGTGTGATCTGCACATGTACACTTTCAAAGATAGTCTTTTTGCTTTTGCATGGTGCCAAGTAGccacactgcagtacagtgtgATGCTCCATGCTGGGCTCAGAGCACTGGTCTTAGTGTTCAATGAGTGTATAAATACCCATCTTGAGCCCTGACTCCAAATTGTCTCTGCAATGATGAACAGTGTGTTGGTTCtgtgattatttattcattttgagaGACCAAGGCAAGATAAATGATCCTTTTATTCAATGTGAGTGAAATGATGAAATGCATCTTAACTGAGCAATTGCACAACTGGGTTATCAAATTAGATGAAAGAGACACTCCGTCTGTATAAcatgaacactttttttctgaaatcagTACTTACAGTGCCAACATCATCCTGGTAAACAAGCTGACTGAATGTCTCCAAGCCTTATGAAATAAATCACATGAAATTTAATGTTACATGTTTAAGTATTAATCCTTGGGTAGACCTTTAatacttcacacacacatatacatatacactcacctaaaggattattaggaacaccatactNN

Function

GO:

id name namespace
GO:0030145 manganese ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32393 lncRNA upstream 5701 28070346 ~ 28078121 (+) True G25819
TU32289 lncRNA upstream 512331 27570543 ~ 27571491 (+) True G25753
TU32235 lncRNA upstream 514469 27566695 ~ 27569353 (+) True G25709
TU32236 lncRNA upstream 514525 27566695 ~ 27569297 (+) False G25709
TU32219 lncRNA upstream 727745 27355874 ~ 27356077 (+) True G25699
TU32410 lncRNA downstream 9861 28104602 ~ 28109590 (+) True G25827
TU32559 lncRNA downstream 587430 28682171 ~ 28699741 (+) True AMCG00007754
TU32560 lncRNA downstream 587430 28682171 ~ 28699741 (+) False AMCG00007754
TU32611 lncRNA downstream 636389 28731130 ~ 28731401 (+) True G25984
TU32676 lncRNA downstream 805317 28900058 ~ 28901126 (+) False AMCG00007763
AMCG00007725 mRNA upstream 27965 27965346 ~ 28055857 (+) True AMCG00007725
AMCG00007727 mRNA upstream 162182 27918958 ~ 27921640 (+) True AMCG00007727
AMCG00007720 mRNA upstream 228388 27841088 ~ 27855434 (+) True AMCG00007720
AMCG00007721 mRNA upstream 270591 27795968 ~ 27813231 (+) True AMCG00007721
AMCG00007723 mRNA upstream 324999 27754213 ~ 27758823 (+) True AMCG00007723
AMCG00007733 mRNA downstream 272527 28367268 ~ 28378252 (+) True AMCG00007733
AMCG00007736 mRNA downstream 320224 28414965 ~ 28421296 (+) True AMCG00007736
AMCG00007734 mRNA downstream 337240 28431981 ~ 28438035 (+) True AMCG00007734
AMCG00007735 mRNA downstream 343903 28438644 ~ 28454033 (+) True AMCG00007735
AMCG00007741 mRNA downstream 457079 28551820 ~ 28576250 (+) True AMCG00007741
TU31514 other upstream 3889341 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 4890301 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 5800864 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 7017039 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 9027689 19051342 ~ 19056133 (+) True G23893
TU32501 other downstream 358268 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 908354 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 1671087 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 7516375 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 10050243 38144984 ~ 38146850 (+) True G27518

Expression Profile