RNA id: TU32410


Basic Information

Item Value
RNA id TU32410
length 2240
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G25827
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 28104602 ~ 28109590 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TgtacttttctttcattttaatttcccttttctAATCCAAATACTTTTTGCAAAAGTATAGATACAAATAATTCTTCAACAATGCacattgtggtttgttttctgtaatgaaaaacacttcaaacactgtaggccttttctttctttgcattgCACGACTCACAAAGCACAGAGCTAGATATTTGAAGGTgattacaaaaccaaaataagcAAAACTTTAGCAAAAAGAGGTGCATTTTCTTTTGGGGACAGTCATCGTTTCTTAAGTTTATTGACACAAGACAGGTATTTATGGGATGTTTGCAGTCAAATTCAGAAGGGGGATTACACAGCCAggctatatataaaatattttacaagatTCCCTGGCTATTTGCCTTGCATTTACCTCACAGCTATTCTTGTCTGATAATTCACACAAGACTCTcttcaaagatttttttttatttttttatgacatttatttaaatagtacagtctttttttttttttttgtccttttttaagAACTGTTATAACCGATTAAACCAATTGGGTCTGCAACTCCCCTTTCCCAGAATGTTTtagaaactgagaaaaaaatatctatcCATTTAACCAATTTGTATATCATATAAATACATGATATATAAATTGGTTAACttcagtgaaatgttttttattttttacttcaagGGCAACATTTCCTGCATTACATgcaggctttttgtttttttcagactGCCACACTGTAGGAAAAAAGTACATTAACAATAAGGAATACCCACTGTGACCACTCAGATACAGGGGGTGCCTTGTGGTGAGAAGTCTCAATGCAGATAACTTGAATAGTTTCTGCCTTGTATCTCaactaaagaaattaaaaaaataaaaatacgaCATTTTGGTGGGAAGCATTGAGAAGTTAATTGGCATTTTTTTGTACATTCCTGTCCAAACAGCTCACAATGTTAAATGCAAAAGCTTTAGAGCATCTATAACAATCTGTTTTTATACAAGTTGTTTCCAAGACTGTTTAACACAAAATCGATTTCTTGGGCCCCCCTAAggccccttttcttttttgccacTGAAGCGTCAGTTAGCCCACATGAAGGGACTTGTTTAAAGcagcattaaaatataaagacagcaacaagaaaattacaaaaagttaGCCCTGCGACCACCAGCTCCAAAGAAGGTTGCCATGTAGATGTGATTACACCTGTTTTTGTTCAGAGATCTTCCTCAACTCTACAAGCTTTAAAACCAAGCATTTTCAAAACACTATTCTGCTGCCATGTTCGAATGGCCGACGCCTTGTTAGAGCGCACAGACTCTTTGGAGAAAGACTTCAGGTGATCCCAGCATCTCTTTCTCAAAGAATTAAAGCCTGTATTCTACCTAAACTGATTTTCCCTTTTTGACCTGAGGAAGTATTGGGAAGTTTATTTGGGGTATTCTGTTTGcgctattaaaataagtatttgaataaaaaaaaaaaaagatttttttccTGTCTTCGTTGACAAGCATCTTGGTAAAGAAACCTAAATAATCCCCCCCCCCTGTGGATTACAGGCCATAGTATGCAGTTTTATGCTAAAAGCAACGGAATTTGAGGATCAAACATTTCTGCTCTAAATTATCAACACAAGAAATGCTAACCCTAACTTGGTTACTTCTTTTTGACTGAGAAAAGCCGAGGCTCAAAGGTTACTAAAGCACTGCTACGGTTGTGGAGAGCTGTAATGAAAACAATGGAGAGAGGGATGAATAGGTTCATTATCCTATGTTAATTATCCAGCCTCCCACCCTCcacataaaatattcaaatataaaacaaaaaaagcagggAGAAATACTTAAACTACACAGCAAATATACATCTTGAAGATTtgtaaagaataaatatttttttgtaatttaaaaattatgcaAACACGTGCCACGCTTGCTCTTTAACTCTTCCATGCATATGCATtatttacaatttgaaaaatactgatttccttttttttgttttgcttttttgtttgttattttacttaaCAAAAGGTTGAACCCCCTTACAATCAGCCAATCAACATTCAGCAACCTGGAAGGGGATCTTCACCATGTACAGCATACATGGCTGACGGGACACAAAGctgtgttgaaaataaaatgtcagtccATTTCCTACACacaaggaaatgaaaaataaagccaaAATGGAAACgaagatgaaaaaaaactgcaaaaaacaaaaacacaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32393 lncRNA upstream 26481 28070346 ~ 28078121 (+) True G25819
TU32289 lncRNA upstream 533111 27570543 ~ 27571491 (+) True G25753
TU32235 lncRNA upstream 535249 27566695 ~ 27569353 (+) True G25709
TU32236 lncRNA upstream 535305 27566695 ~ 27569297 (+) False G25709
TU32219 lncRNA upstream 748525 27355874 ~ 27356077 (+) True G25699
TU32559 lncRNA downstream 572581 28682171 ~ 28699741 (+) True AMCG00007754
TU32560 lncRNA downstream 572581 28682171 ~ 28699741 (+) False AMCG00007754
TU32611 lncRNA downstream 621540 28731130 ~ 28731401 (+) True G25984
TU32676 lncRNA downstream 790468 28900058 ~ 28901126 (+) False AMCG00007763
TU32753 lncRNA downstream 964866 29074456 ~ 29082381 (+) True G26103
AMCG00007725 mRNA upstream 48745 27965346 ~ 28055857 (+) True AMCG00007725
AMCG00007727 mRNA upstream 182962 27918958 ~ 27921640 (+) True AMCG00007727
AMCG00007720 mRNA upstream 249168 27841088 ~ 27855434 (+) True AMCG00007720
AMCG00007721 mRNA upstream 291371 27795968 ~ 27813231 (+) True AMCG00007721
AMCG00007723 mRNA upstream 345779 27754213 ~ 27758823 (+) True AMCG00007723
AMCG00007733 mRNA downstream 257678 28367268 ~ 28378252 (+) True AMCG00007733
AMCG00007736 mRNA downstream 305375 28414965 ~ 28421296 (+) True AMCG00007736
AMCG00007734 mRNA downstream 322391 28431981 ~ 28438035 (+) True AMCG00007734
AMCG00007735 mRNA downstream 329054 28438644 ~ 28454033 (+) True AMCG00007735
AMCG00007741 mRNA downstream 442230 28551820 ~ 28576250 (+) True AMCG00007741
TU32400 other upstream 9861 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 3910121 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 4911081 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 5821644 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 7037819 21060401 ~ 21066783 (+) False AMCG00007514
TU32501 other downstream 343419 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 893505 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 1656238 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 7501526 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 10035394 38144984 ~ 38146850 (+) True G27518

Expression Profile