RNA id: TU32595


Basic Information

Item Value
RNA id TU32595
length 2981
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G25972
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 28696465 ~ 28699849 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCATAGGACACACACCTGTATAATCTCTGAAATCTGTGACTTGGGGAAAGCAACacaacacttttatttaattattgtgcatttattctaaaaatattatttttgtaaaccgTGCAGTTGAAAAACGTCAGATGCCAGACcactaaaaaatacaatacaaaaaatgatgtATATATGCAGATACattggctataggaagtattcacccccttgtaatcacatttttaaaaaatgcacaacctactcaacacctTGAAGAtgcaatatacatattattgtgaaacaacaattaatgaaaaatacaaaaactgaaacagaagtattcacccccgaGTCAAAACTTGGTCGAACCACCTTcgacagcaattacagctgtggaTTGTTTAGGGTAAGTTTCTACCAGGTTTgaacatctggattgtgcagtATTCAGTATTGGATGGGAATCATTGGTGGACTTAAATCTTCAaatcttgccacagattctcagaTTCAAGTTcagactttgactgggccactatagaacattcactttcttgtttttaagccactccagggtcgctttgtctgtttttgaaagctccATGGCCTTGTGTCtttaaaaccatatttattGCATCCAGATATATtcaacttattgtgtgaatCCTGAAGGCACCCaagcttatttaggagtgtcatagcaaaggagGTGAATACTTCtgtaatgaagacttttcaggtttttattttaaatggtttagttttttcaacaCATTAAATGTTGTGGagtatgttgtgtaaatcaaagaaaaaagaaaattgtaatgcatcaaataaacaatgtttagATATGgatttcttgtgtgtgtgaaatgaatgaatacagcCTCAGTACACTACACAAGAATATAAagctttacatttatattgaacatttcaacatAATTCTACTATGATATAACAGTTACCCAGTGTAATATTATATTACCCTTAATTAAGTAGTTACATTCAGATAACATCCAGGTTTCCTTCATTTCAATTAGGTcttaaagattattattttttatctcattAATGAATTTTAGGTTTCCTCTAAGGAACTATAGaagtacaatatataaaacattaagaaaaaaaaaaaacactgatgtcTATCATACAGTGCAGCATGGCTGGGAGAGTCAGTCTACTCCATTTCAATTacttccttttcttgttttaaaggtACAAAGTCTTTTTTTGGAGATCTTTTTTCCCgtcacaacaaaaacaattacaattatgaagatgattacaCCAAAACACCACAGGATGCTTCCTACCATCAATCCTGTAAGAAAGTGAACCATCACAGAACTTATAAACATTACAGTAGCTAAACTGAGATATTTTCCACGTTTATgtgtattatatacagtactgtgcaaaagttttaggcaggtgtgaaaaaatgctataaagtaagaatgctttcaaatagacatgttaatagattttagttatcaattaaaaaaatgcaccccagttcctgtgttttcgtgcatagttgagttgcttggccttgttaccacgtcggaggtatgactttttggctgcaagtcttccatgaaggccattTCTGACCAgattctccggacagtagatggtgtaccagggtcccactgttttctgccaattctgagctgatggcactgctggatatcttccgattgcaaagggaagtaagcatgatgtgtctttcatctgctgcagtaagtttccttggccgaccactgcgtctacggtcctcaacgtttccggtttctttgtgcttcttcaaaagagcttggacagcacatctggaaacccctgtctgccttgaaatgtctgcctgggagagaccttgctgatgcagtataactacctgttgctgtgctcagtcttgccatggtgtatgacttttgacagtaaacagcaacctcaccttgttagctgagtttggctgttcctcacccagttttattcctcctacacagctgtttctgtttcagttaatgattgtgtttcaatgtGATTTCAAAAATCCCTGACTTTTTGCAAACGTACAACTGcaaactgatgctgttttgaaggcaaagggtggtcacaccaaatatggatttgatttagatttttcttctgttcactcactttgcatttagttaattgataaatataatctatgaacgTGTAGTTTTGaatgcattcttactttacagcattttcttttgcacagtactgtatatattatttcataaaGTAAAATCTGATAATTACAGAAAGATTTACTTGTATAcaacatttgcaaatatttaaatgtagtcATGAGACTATATTTATGTAGGCTACTCTGAAGAAAATGTTGAGAAttgattaaacaatatatacatgtaaagaaTGCCATTTAGACTTCAAAAATcaataaagttaatatgtaCCAAATAATAACGAGAGAGGAATGTATGTATAATACGAATGAACATACCTGACTGGTGTTCCTCATCATCTTTCAAAAGACTCAATTAAGTTCCCCCCCCAACAGGATATGAAATCAGTATGCaccagtaaaaaaatacaatgtaggACTAATCTGAACCCATGATTCAATCAGAAGTGAATTACTCAGTGAATCCACTCCAATGCATATTCCTGCAGCACGATATACTGTTTACATACCCACAGATACTTTTTTCTGGAATATCTTCATCGTCGTCTTCAATTACAGTATctgagaaaacacaaatatttattttggaatcaAAGCAATCTGCTTCAGTGACAGACATTAtggaataattaaaataagagcCCTAAGCAACATAGCACAAAATTAAACAACTGTAATCACCTCTGACCTCTTTtttagcgcttttccaccgacaagtaGCCGGTGCTCGGCCTCGGAAGCAGCTGATGATTTTGGGAACCGgcgcgcttttccaccggttttggacccgaacgctgacgtcactggtgtgGG

Function

GO: NA

KEGG:

id description
ko04976 Bile secretion
ko04975 Fat digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32318 lncRNA downstream 1029393 27662224 ~ 27667072 (-) False G25768
TU32317 lncRNA downstream 1029915 27662224 ~ 27666550 (-) True G25768
TU32286 lncRNA downstream 1131756 27564039 ~ 27564709 (-) True G25750
TU32285 lncRNA downstream 1132775 27563240 ~ 27563690 (-) True G25749
TU32284 lncRNA downstream 1133447 27562728 ~ 27563018 (-) True G25748
TU32612 lncRNA upstream 32915 28732764 ~ 28732994 (-) True G25985
TU32614 lncRNA upstream 34263 28734112 ~ 28734449 (-) True G25987
TU32688 lncRNA upstream 194844 28894693 ~ 28898576 (-) True AMCG00007757
TU32710 lncRNA upstream 301200 29001049 ~ 29001957 (-) False AMCG00007768
TU32742 lncRNA upstream 331561 29031410 ~ 29049165 (-) True G26092
AMCG00007748 mRNA downstream 22203 28647011 ~ 28674262 (-) True AMCG00007748
AMCG00007749 mRNA downstream 59159 28624088 ~ 28637306 (-) True AMCG00007749
AMCG00007750 mRNA downstream 84224 28595995 ~ 28612241 (-) True AMCG00007750
AMCG00007744 mRNA downstream 115275 28579139 ~ 28581190 (-) True AMCG00007744
AMCG00007742 mRNA downstream 146919 28546752 ~ 28549546 (-) True AMCG00007742
AMCG00007762 mRNA upstream 54631 28754480 ~ 28761777 (-) True AMCG00007762
AMCG00007758 mRNA upstream 77906 28777755 ~ 28843806 (-) True AMCG00007758
AMCG00007761 mRNA upstream 162729 28862578 ~ 28866585 (-) True AMCG00007761
AMCG00007760 mRNA upstream 166755 28866604 ~ 28878017 (-) True AMCG00007760
AMCG00007757 mRNA upstream 198117 28897966 ~ 28921123 (-) False AMCG00007757
TU31949 other downstream 3064873 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 3431514 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 4428544 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 4723800 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 8223761 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 6169586 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 8540240 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 8795062 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 8867768 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 8871108 37570957 ~ 37571488 (-) True G27439

Expression Profile