RNA id: TU32804


Basic Information

Item Value
RNA id TU32804
length 322
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G26146
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 29311623 ~ 29311944 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cgctactccactgctccgctccctccactggctcccgatagcggcacgcattcagttcaagactttgaccctcacctaccgctgtctcgaccacactgcaccaagctaccttcagtcactcgtctctccatacatcccctccagaccactgcgctcctccagtgccagaaggctaactctgcctcctctccactctccttcctccagagccgctccttctcatccctgaaccctaaatggtggaacgacctgcccaccgaagtcaaaacagcagagtccttgacctcattccggcgcttactcaagacgcatctcttccgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32753 lncRNA upstream 229242 29074456 ~ 29082381 (+) True G26103
TU32676 lncRNA upstream 410497 28900058 ~ 28901126 (+) False AMCG00007763
TU32611 lncRNA upstream 580222 28731130 ~ 28731401 (+) True G25984
TU32559 lncRNA upstream 611882 28682171 ~ 28699741 (+) True AMCG00007754
TU32560 lncRNA upstream 611882 28682171 ~ 28699741 (+) False AMCG00007754
TU32833 lncRNA downstream 55429 29367373 ~ 29367723 (+) True G26167
TU32837 lncRNA downstream 62432 29374376 ~ 29375878 (+) True G26171
TU32864 lncRNA downstream 227739 29539683 ~ 29540062 (+) True G26196
TU32910 lncRNA downstream 400555 29712499 ~ 29724420 (+) True AMCG00007788
TU32916 lncRNA downstream 414450 29726394 ~ 29729537 (+) True G26243
AMCG00007774 mRNA upstream 22930 29258430 ~ 29288693 (+) True AMCG00007774
AMCG00007766 mRNA upstream 240167 29059031 ~ 29071456 (+) True AMCG00007766
AMCG00007764 mRNA upstream 256172 29032754 ~ 29055451 (+) True AMCG00007764
AMCG00007765 mRNA upstream 279416 29024785 ~ 29032207 (+) True AMCG00007765
AMCG00007769 mRNA upstream 305244 29003284 ~ 29006379 (+) False AMCG00007769
AMCG00007775 mRNA downstream 9287 29321231 ~ 29336890 (+) True AMCG00007775
AMCG00007773 mRNA downstream 27702 29339646 ~ 29342580 (+) True AMCG00007773
AMCG00007776 mRNA downstream 39126 29351070 ~ 29351882 (+) True AMCG00007776
AMCG00007777 mRNA downstream 43107 29355051 ~ 29361487 (+) True AMCG00007777
AMCG00007781 mRNA downstream 80963 29392907 ~ 29402001 (+) True AMCG00007781
TU32711 other upstream 307850 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 856916 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 1216882 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 5117142 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 6118102 23189460 ~ 23193521 (+) True G24824
TU32939 other downstream 453884 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 6299172 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 8833040 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 8856626 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 9043985 38355929 ~ 38412929 (+) False AMCG00007957

Expression Profile