RNA id: TU32926


Basic Information

Item Value
RNA id TU32926
length 2353
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G26249
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 29738702 ~ 29741082 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaattattcagttatttttattttcattacaaatatttctCAACATAAAACCAATATCATGTTACAAAAATTGATTCTGAGATTCAATgttataaaatatcaaacaataaAATTTCAATTTATCATTTGTAATTCTATATGAGAGAAGTGGTCAGTGGTCttaatacttttgcaaggcaggtacatataaaatatatatgtacagctctggaaacaattaaagagagcactccaagttcagaaatcaatgttaagtggtctcttaatttttctcagagctgtatgtatgtatgtatatatatatatatatatgcacagtaaTGACAGTAAGTCATTATATGCCATTCTGTCATATAATTGCAGTAGATTATGGTTACACCTTTTTATAATTTCCCAACTGCCACACCATTACTTATGTCCACATAAAATACTTGTGAATGCAACTTTACATTGCTGGATTCCAATACTGTGTTTCCAGACTGTACCTACAATGTCTGTAatggttaatatatttatattgcctTAGACACTAAAAGCCACAATTCTAAGGCTGTATGCAAGAATCACAAAAATCCCATAATGCAGTTATACACTTGAAAATAAAAGctattttatgattaaaatacTGCAGATCTTAAATCAAATTGAAAGAGCTTCACATTCAACTGAAGATATTCAAACATAACGCACTAATACAGATTCTGAAAAAATcttgattgatttatgtatttcattgttactgtactgttacatttcacaCAGCAATTAATTATACTTTACAAAATATGGCATTGAAATGTGTCAGCACATAATCTGGGAAAAGTATTCATATATTGCAGCTAAAATAAGTTGTTTGTGGGGAATTATTACAATGGAAAATTCATACAATTAACGTGGCAAAGTTTACTTtggactgttacttttgattcagtttacatatttaattggaTCTGACTGCGTGTTGCGATTCTTATAGAAACCATATTGAGAGCTACAACATGAAGGAGTTTGTTGGTAAACCGcgaaagcaaaattaaaattagcAGAGCTGACAAACTGATAATTTAAATCCAATAAATCCAATGCAATAACTTTCAATAACAGCTTTCATAACAGTTTCAGGGGGAGTTCCTTCAAGGCTGTTGTCTGTCTGACCTCTCTCATAGCTGCTGGAGAAATTTAAACTAAAAGTGTTTCCACTGTGTCGTTGTTTTTAGGATGACATTGCTCTAGTAACCTGTGATGTCAGATGGACAGAAGAGAACATTTACTCCAAGCTGACATCTTGAACGTGAGAGCAGTAGACTTGTGGGTtacaaaaactaatttgaatgtcaagaaatggaaagaaaaaatacagggTTCTGGCCTAAACAGATTAATAAACATTTGGcgatttatacatttcaaaacactgcAATGTGTGCTTTAAAGTTATCAGTCTTTAACATGACTGTGTGACCATGTACAGATGAGCATGCATGGTTGTATACATTCTTTCAATGAGCACATCATGTTTAAACAAAGAGCTTGGGGTAAAATCCCATCTGGTTAGCACCTCAGAGATCATACTGTAGTATTATCAAAAGGATAAAAGTTTAGTTCAAACAATTGCATTGttggcaaaaacacaaaacaacaccaaGTCATCTCACCACCAGCTCTCCATTACTCCAcaacttttcaaatgtatttctctctATTGGTAGTGTAAAGACATGAAAATAACAAGGAGAGGAACATCCTTCTCCTCTAAGAAAAACGTGTGattgtaaaatattacatcTGCTCTCATTTCAACGTCAAATCATTTTCAGTGACTGTGCGTCTCCCTCTGTGTCAGGTGCTCCTGGCTCTCTCAAACTCCAGCGCAATCTTCAGGGCTGTGCCATTGAGGCCAACAGACTGCATGTTGCAGATGATCGTTACCACCACCCCCTGTGGAGGGGTTGATGTCTCCATCTCGGTCTGAACCAGATCACTTGGTAACAGTAACAGGACACTGCTGGCCCCTACTGCGCCCCCTGTGTGTGAAACATAGTGGCGTCGCTTTCTACACAGCCcaaactgctgctgcttctcCACCACTAGCCAGCCCATTGCGTACTGTCCATCCTTGTCCCAGGAACCCTCAGTTCTCTCCACAGGAGTCCACATGGTTTGAACCGTCTCTGGTTTGAGGTAGCCTGGCAGGAGGCCTCTGCTGTCCTTAAGCTGTGCCATTTGGTAGCTGTACAGCATGGCATTGCCGAACACCAGCAGGTCACCCACAGTAGACAGAAAGCCACCCCCTGCCCATTTGTAGGAGTTGTCCACATAAGGGCAGTTCACAATACGgccttttttattgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32916 lncRNA upstream 9165 29726394 ~ 29729537 (+) True G26243
TU32910 lncRNA upstream 14282 29712499 ~ 29724420 (+) True AMCG00007788
TU32864 lncRNA upstream 198640 29539683 ~ 29540062 (+) True G26196
TU32837 lncRNA upstream 362824 29374376 ~ 29375878 (+) True G26171
TU32833 lncRNA upstream 370979 29367373 ~ 29367723 (+) True G26167
TU32937 lncRNA downstream 13958 29755040 ~ 29819552 (+) False G26258
TU32938 lncRNA downstream 13958 29755040 ~ 29766096 (+) True G26258
TU32935 lncRNA downstream 27111 29768193 ~ 29775035 (+) False G26258
TU32936 lncRNA downstream 27111 29768193 ~ 29775035 (+) False G26258
TU32945 lncRNA downstream 58675 29799757 ~ 29803603 (+) True G26262
AMCG00007788 mRNA upstream 13968 29622311 ~ 29724734 (+) False AMCG00007788
AMCG00007787 mRNA upstream 130105 29586473 ~ 29608597 (+) True AMCG00007787
AMCG00007784 mRNA upstream 253519 29437666 ~ 29485183 (+) True AMCG00007784
AMCG00007785 mRNA upstream 301669 29433012 ~ 29437033 (+) True AMCG00007785
AMCG00007781 mRNA upstream 336701 29392907 ~ 29402001 (+) True AMCG00007781
AMCG00007796 mRNA downstream 188666 29929748 ~ 29941831 (+) True AMCG00007796
AMCG00007797 mRNA downstream 204038 29945120 ~ 30043181 (+) True AMCG00007797
AMCG00007798 mRNA downstream 647111 30388193 ~ 30401103 (+) True AMCG00007798
AMCG00007799 mRNA downstream 667949 30409031 ~ 30429130 (+) True AMCG00007799
AMCG00007800 mRNA downstream 688758 30429840 ~ 30438133 (+) True AMCG00007800
TU32711 other upstream 734929 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 1283995 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 1643961 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 5544221 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 6545181 23189460 ~ 23193521 (+) True G24824
TU32939 other downstream 24746 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 5870034 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 8403902 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 8427488 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 8614847 38355929 ~ 38412929 (+) False AMCG00007957

Expression Profile