RNA id: TU32936



Basic Information


Item Value
RNA id TU32936
length 557
lncRNA type inter_gene
GC content 0.53
exon number 3
gene id G26258
representative False

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 29755040 ~ 29819552 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCTCTCGCTCTCATCAGCAGCCTtctcggcctcctccagcttcTGCAGCGCTGTTGCCAGACGCTCCTGTGCACGATCCAACTCCTCCTCAACCAGCTGGATACGTCTGTTCAGGGAAGCTACATCACCCCATCGGTAGCTTTCTTCTCGGCCAATTCCAGTTTCTCCTGGGCATCTTTAAGGGCCTCGGAGTACTTGTCCAACTCATCCTCGGTGGACTTGAGTTTCTTCTGCAGAGCTACCAGCTCATCCTCGAGCTGctGTTTGCTCCTGTCCTCGGCTGCCTTCTTGTCTGCTTCAGCTTGCTCAGCTCTGTCCAAGGCGTTTTCCTTGTCGAGCTTGAGCATCTGCATCTTCTTCTTGATGGCATCCATGGCTGTTTATTGTGTGTGGCCGAACAAAATGCTCCAAAAGAAACTGAACTGAAGGAGAGATGGCTTAGAGCGACCGTGCCGAACCGAACGCCAAGCTGGAGTGCAAGCTCTTTCTGCCTGCACCCTCTCAAATATGTACTTTCGCAGGGGGGTGAATGAATTCCTTTGGACACCCAATACTTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU32938 lncRNA upstream 2097 29755040 ~ 29766096 (+) True G26258
TU32926 lncRNA upstream 27111 29738702 ~ 29741082 (+) True G26249
TU32916 lncRNA upstream 38656 29726394 ~ 29729537 (+) True G26243
TU32910 lncRNA upstream 43773 29712499 ~ 29724420 (+) True AMCG00007788
TU32864 lncRNA upstream 228131 29539683 ~ 29540062 (+) True G26196
TU32945 lncRNA downstream 24722 29799757 ~ 29803603 (+) True G26262
TU33009 lncRNA downstream 627530 30402565 ~ 30406647 (+) True G26319
TU33060 lncRNA downstream 735500 30510535 ~ 30522510 (+) True G26360
TU33144 lncRNA downstream 1169266 30944301 ~ 30945248 (+) True G26430
TU33143 lncRNA downstream 1170268 30945303 ~ 30946095 (+) True G26429
AMCG00007788 mRNA upstream 43459 29622311 ~ 29724734 (+) False AMCG00007788
AMCG00007787 mRNA upstream 159596 29586473 ~ 29608597 (+) True AMCG00007787
AMCG00007784 mRNA upstream 283010 29437666 ~ 29485183 (+) True AMCG00007784
AMCG00007785 mRNA upstream 331160 29433012 ~ 29437033 (+) True AMCG00007785
AMCG00007781 mRNA upstream 366192 29392907 ~ 29402001 (+) True AMCG00007781
AMCG00007796 mRNA downstream 154713 29929748 ~ 29941831 (+) True AMCG00007796
AMCG00007797 mRNA downstream 170085 29945120 ~ 30043181 (+) True AMCG00007797
AMCG00007798 mRNA downstream 613158 30388193 ~ 30401103 (+) True AMCG00007798
AMCG00007799 mRNA downstream 633996 30409031 ~ 30429130 (+) True AMCG00007799
AMCG00007800 mRNA downstream 654805 30429840 ~ 30438133 (+) True AMCG00007800
TU32711 other upstream 764420 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 1313486 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 1673452 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 5573712 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 6574672 23189460 ~ 23193521 (+) True G24824
TU33841 other downstream 5836081 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 8369949 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 8393535 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 8580894 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 8657010 38432045 ~ 38436595 (+) True G27551

Expression Profile