RNA id: TU32937


Basic Information

Item Value
RNA id TU32937
length 1821
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G26258
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 29755040 ~ 29819552 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATTGTTTCTAAAAGGCCAAGAGTTTTATTCTGGCTTTTAAACCCTGATCCAGTGAGCTGAAGTAATCCATAAGCACACTCGTGACAGACATTTTTCCAGCCCTTGAAAGCTAGGCCTTAGCAAGCACAAGCAAATtggaaatgtaataatgttGCCTCCTGGGCACTTTGCCATTTGCCCTACAGCACTAAGCATTTAGCTGAAAGTCTGTTTCCTGTAATATGAAATTGTTTGTAAAGTATTTGGATGTTCCAAGGGCTAAAAGTTCATGTGACCAAATTCACCATGTATAATTACCCAATTAACacattgggggagggggggctggtcattaacattttaattgaagtttgTTAACCCTTCCTTTGGATGAAAACTTGTGATCATACAATAgtgcaaaataaagcaatgggcaaattaagcaattatagaGGCCACTTCTGTGCCCCTATACTACAGATCACCCTCACAAACTTCTAATTAATGCTACTGTGATCATACAATTTTTTGTGATTTCTCATTATTGggcaaacaaatgtattgagaAGAGAAGGATttaaaattacactttaaaatgttaaccATGATGTTTACACTTACAAAAAAGGTGCCTGATCAGCTTTATATTCAATGTCATGAAACCATGAACTGCTGGAATGTAAATTTTACAATAGATTTCTATGGTCTTCAAATGGGGAAGTCATAGAAGTGCATCTTTTGGATTTCATGTaggacttaaaaacaaaaacaaacacattctaCAAAACTTCAAAAAACGgtgaggttttattttatatttattacatttatacattttatataaggtttatatttaaaacctctcaaaataaagtgtaaaataagTGAGGCACTACCAAATTGATGTCCATAATGAAACCAAAGTCAATAATTTTCCCCCAAGGTAAAATTATTGAACTTTTGAACCTTAggtttaaacataaaaacaaaatatgcattttttaagcTAAATGCtgtcatacattttgtaatgagTTTCaggtttaaaatttaaaaaaaaaaaaatgtactggaGTGTGAATCCCTTTCTAACCTTAACTAAATATTGGCACTCAGCTATTCAGAAAATAgccaatgtaaaaaaatatttcattcgTATTGCATATGCAATGTAAAAATTATCTGAAGCTTTACATGTTCTTTTCATTCACAGTAGCACCAGTATACACATGAACGGTTTTCTccaatgtatacacacacaaaacagagacatacaaaaaaaaaagcttttacaaaACCTTGGCTTTCATCAGGAATTGGCTTCAAAGCAGACATGCACATCTTGACAGCAACATTGAGACAAATTTACAAAGGAAAATTCATATTGTAAAACTAGcgatatacaaaacaaatcggAATGTACCATTCTGGATTGATGaatagaattattttatttagaatttttttttttccatgcgATGACTTCTCAAAACTCCTTACAAAATGTAGACATCATTAAAATTAGAAAATCAGTTCGTATCAATACTAGTGTTTCTTGTATTCGGCTTGCCAAGGAGCAGTTGGTCCTATCCCCAGGCTTGTTCCTTCGTTGAGCTCCAATGAAAGCAGGACGGTGCAAATGTAAAGCTTCTTATGGTTATTTCTTTTCCAGCAAGGAGATAGGGAATGGAGGGAGGGTCATGGCAAGCGAGGTGCAAGTAAAAAGGTGGGCATAAAACAAGCCTTTCACATGTTATTTAGTTCCAGTAGAGTCTGATCCAACATCTGGTGCATATTGAGGTTTTCTTCCTTAGCATGTGCAAGTTTCTCTCCAAGGTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32926 lncRNA upstream 13958 29738702 ~ 29741082 (+) True G26249
TU32916 lncRNA upstream 25503 29726394 ~ 29729537 (+) True G26243
TU32910 lncRNA upstream 30620 29712499 ~ 29724420 (+) True AMCG00007788
TU32864 lncRNA upstream 214978 29539683 ~ 29540062 (+) True G26196
TU32837 lncRNA upstream 379162 29374376 ~ 29375878 (+) True G26171
TU33009 lncRNA downstream 583013 30402565 ~ 30406647 (+) True G26319
TU33060 lncRNA downstream 690983 30510535 ~ 30522510 (+) True G26360
TU33144 lncRNA downstream 1124749 30944301 ~ 30945248 (+) True G26430
TU33143 lncRNA downstream 1125751 30945303 ~ 30946095 (+) True G26429
TU33147 lncRNA downstream 1136086 30955638 ~ 30955893 (+) True G26433
AMCG00007788 mRNA upstream 30306 29622311 ~ 29724734 (+) False AMCG00007788
AMCG00007787 mRNA upstream 146443 29586473 ~ 29608597 (+) True AMCG00007787
AMCG00007784 mRNA upstream 269857 29437666 ~ 29485183 (+) True AMCG00007784
AMCG00007785 mRNA upstream 318007 29433012 ~ 29437033 (+) True AMCG00007785
AMCG00007781 mRNA upstream 353039 29392907 ~ 29402001 (+) True AMCG00007781
AMCG00007796 mRNA downstream 110196 29929748 ~ 29941831 (+) True AMCG00007796
AMCG00007797 mRNA downstream 125568 29945120 ~ 30043181 (+) True AMCG00007797
AMCG00007798 mRNA downstream 568641 30388193 ~ 30401103 (+) True AMCG00007798
AMCG00007799 mRNA downstream 589479 30409031 ~ 30429130 (+) True AMCG00007799
AMCG00007800 mRNA downstream 610288 30429840 ~ 30438133 (+) True AMCG00007800
TU32711 other upstream 751267 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 1300333 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 1660299 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 5560559 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 6561519 23189460 ~ 23193521 (+) True G24824
TU33841 other downstream 5791564 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 8325432 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 8349018 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 8536377 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 8612493 38432045 ~ 38436595 (+) True G27551

Expression Profile