RNA id: TU33049


Basic Information

Item Value
RNA id TU33049
length 1738
lncRNA type inter_gene
GC content 0.44
exon number 10
gene id G26352
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 30431806 ~ 30437988 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccgagttattttgatttatttacttttccactGAAACAAGGAtgactgtttttttaaaataaaaacaaagtaataaccCTAATACAGAGGCATGTCGGATTATAAAGATAGGCACTGGATAAGGTTATGGAGAGTACAGGAATGTAAGGCACCAGGACGAGGCTGGTCTTGCAGGAATGTTTGGCTTAATCATCCCCTGCACACAGACTCAGCAAAACCTTCTGGTAATCTCCCTTGGTGTGTTCAGCGATGGTCTGATAGAGGGATTTTCCAAACTGCTTCTTGTATTCCGATCGGATCTTCATCAAGTCCACCTCACAGCGGGACACCATGATCCTGGTCAGCAGCTTCTCCTTGGCTCCTTTGCTCTGAAACAGTgcagattaatcaattaaaacccCAACGGGGCCACAGGATTAGAAGGTCATCGTCTCCGCAGATTCTGAATGAAGTGCAATTACttatcaaatccaacattttctattggtcagtctttattttaattgctggGAATTCCAAAGGAATGCAAGAAGCTATAATTTATATCCTTTTGCCCTTTCATGAatagaaacagacaaaaaataaaccgAATAAATCTTAACATATCTGGAATAGGAGCACTATTTTCCTAAATTAACATCAGCAGGGCAAAGCAACCACAATACAACATTGAAATCAGAGTGCTTCTGAAACCTTGTAAACTTGCCTGGTCACAGTACGCCACtatggttttaattattcttgCATGACATGTAAACCGATGCAGACCATTTGCACAGGCAGGTGGTCATCGGTGACAAGATGGATGCTTACACAGGCCACACCCACCCCAAAAGGAAGAACCTTACCTTCATAGCATCGTTGAGTCGGTTTGCAAAATACAGTTGCTTATTTTCAAAGCACtgaaCCAGGGTGAGAAAAGACTTCTCCAGGTCTCCTTTCACTTCTTTTCGGATGCTTTCCTGCATGTCATATGGGCTGTAGCTCTTGTACCTGTCAAACTTTCTGTAGGTGGGGTACACTCCTTTCTGACATAATGGTTATCCAGGTGGCAACATCAGTTCCCTTCCTCTTAACCCCAGCCTCATAGAGGGCTCTGGCATCCTGGTCAATCAGCTCATAGTCCACAATACTGCTGGGTGCTTGTCTTGGTGTCTTCACCAGAGCCAGCAGAAGTTTTCTGAAATCCCCAGACGTGTCTCCTTCTACATCCTTCTCCAGATCTTTCTTATAAAATTCCTTGTAGACAGCCTTGATTTCGGAAAGTTCGTCGCTGCTCCGAGAGCACATCAGTTCAATTAGTGTTTCTTCATCAGTTCCTAGAccCTTCATAGACGATTTCAGCTCAGAGGCATCATACTGGGGTGTGCTCTTCATGAGACCCAGGATCACCAACTCCAGGGATCCAGACAGGGCACCTTTCAGAGCACTGATCATCCTTCTTGGCCCGCCTTTCATAAGCAAAGGCAATATCACGCCTCTGTGAATAGCTGCGCTTGGTCAGAATATCAATAATCGTCTGCTCATCCACCACCCTTTGTTTTGATGGCAGTCTCAATTCTGGCAGCATCCTTCTCAGGGTCAAAATCAGGAGCTGGCACCACAGTAGGGAACTTGGGTTCAGAAGCCTGCAAGTTTATAAGAGAGGCCTTAGGAGAAGTATTGGCCCACTGCCAAAGATCTGACAAACCAgcttcctttttaaaaactataattcCATCAATTTGATTGTCCATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32901 lncRNA downstream 823210 29608317 ~ 29608596 (-) True G26231
TU32831 lncRNA downstream 1065561 29365624 ~ 29366245 (-) True G26165
TU32805 lncRNA downstream 1119863 29311618 ~ 29311943 (-) True G26147
TU32768 lncRNA downstream 1199098 29230943 ~ 29232708 (-) True G26115
TU32742 lncRNA downstream 1382641 29031410 ~ 29049165 (-) True G26092
TU33076 lncRNA upstream 172230 30610218 ~ 30611693 (-) True G26370
TU33115 lncRNA upstream 362423 30800411 ~ 30875378 (-) True G26403
TU33130 lncRNA upstream 465681 30903669 ~ 30903895 (-) True G26416
TU33227 lncRNA upstream 783439 31221427 ~ 31246649 (-) True AMCG00007817
TU33228 lncRNA upstream 806552 31244540 ~ 31246649 (-) False AMCG00007817
AMCG00007795 mRNA downstream 567195 29799746 ~ 29864611 (-) True AMCG00007795
AMCG00007793 mRNA downstream 656853 29765938 ~ 29774953 (-) True AMCG00007793
AMCG00007792 mRNA downstream 665951 29757456 ~ 29765855 (-) True AMCG00007792
AMCG00007790 mRNA downstream 681227 29738738 ~ 29750579 (-) True AMCG00007790
AMCG00007791 mRNA downstream 696107 29728882 ~ 29735699 (-) True AMCG00007791
AMCG00007801 mRNA upstream 70894 30508882 ~ 30509502 (-) True AMCG00007801
AMCG00007804 mRNA upstream 176001 30613989 ~ 30614885 (-) True AMCG00007804
AMCG00007803 mRNA upstream 181430 30619418 ~ 30639376 (-) True AMCG00007803
AMCG00007807 mRNA upstream 372806 30810794 ~ 30830616 (-) True AMCG00007807
AMCG00007810 mRNA upstream 478372 30916360 ~ 30924500 (-) True AMCG00007810
TU31949 other downstream 4800214 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 5166855 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 6163885 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 6459141 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 9959102 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 4431447 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 6802101 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 7056923 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 7129629 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 7132969 37570957 ~ 37571488 (-) True G27439

Expression Profile