RNA id: TU33076


Basic Information

Item Value
RNA id TU33076
length 489
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G26370
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 30610218 ~ 30611693 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTGTGCCGAGACCTGGGCGTCCTGGAAAGCACGGTACTCACCCGAAAGTTGACCCGATTGCGCACCCTATTCGCCAGCGCTGTGTTAATGGCTTTATCAAACTGAAGGAGCACCTGGAGTGCAAGCTGTGGAGTGATCTGTTGGGTCTGAATGAGTTCGTCCAGACTCTCCTGCAGACTGTTCCCCAGGGTGGTATTTCTGTAAAGCTGGTATGCCATTTTATCTAACTGTCTGAGTAGTAATACCAAGGTTACAAGCCCTTGTTGTTAATATAATCAAAACTCCCTCGTACTGGTATTTCCCTTCCCCGTCCTGTTGTTGTCTCTTAAACAGGAAGCATAAACCCGGTACACAGAGTACGGCACACCGAGAAGGACAAACATGACGAAGAGCGCGGACCTTCACGCTGTGGACTTGTTCGTGCTGGAGTGCGGCGTTTCGGAgcacctttattttaaaatgcagttattgTGATAGAGAAATTCAAC

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process

KEGG:

id description
ko04110 Cell cycle
ko04114 Oocyte meiosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33039 lncRNA downstream 155590 30404998 ~ 30454628 (-) True G26342
TU33049 lncRNA downstream 172230 30431806 ~ 30437988 (-) True G26352
TU32901 lncRNA downstream 1001622 29608317 ~ 29608596 (-) True G26231
TU32831 lncRNA downstream 1243973 29365624 ~ 29366245 (-) True G26165
TU32805 lncRNA downstream 1298275 29311618 ~ 29311943 (-) True G26147
TU33115 lncRNA upstream 188718 30800411 ~ 30875378 (-) True G26403
TU33130 lncRNA upstream 291976 30903669 ~ 30903895 (-) True G26416
TU33227 lncRNA upstream 609734 31221427 ~ 31246649 (-) True AMCG00007817
TU33228 lncRNA upstream 632847 31244540 ~ 31246649 (-) False AMCG00007817
TU33235 lncRNA upstream 727152 31338845 ~ 31342792 (-) False AMCG00007822
AMCG00007801 mRNA downstream 100716 30508882 ~ 30509502 (-) True AMCG00007801
AMCG00007795 mRNA downstream 745607 29799746 ~ 29864611 (-) True AMCG00007795
AMCG00007793 mRNA downstream 835265 29765938 ~ 29774953 (-) True AMCG00007793
AMCG00007792 mRNA downstream 844363 29757456 ~ 29765855 (-) True AMCG00007792
AMCG00007790 mRNA downstream 859639 29738738 ~ 29750579 (-) True AMCG00007790
AMCG00007804 mRNA upstream 2296 30613989 ~ 30614885 (-) True AMCG00007804
AMCG00007803 mRNA upstream 7725 30619418 ~ 30639376 (-) True AMCG00007803
AMCG00007807 mRNA upstream 199101 30810794 ~ 30830616 (-) True AMCG00007807
AMCG00007810 mRNA upstream 304667 30916360 ~ 30924500 (-) True AMCG00007810
AMCG00007811 mRNA upstream 332919 30944612 ~ 30947926 (-) True AMCG00007811
TU31949 other downstream 4978626 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 5345267 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 6342297 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 6637553 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 10137514 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 4257742 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 6628396 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 6883218 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 6955924 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 6959264 37570957 ~ 37571488 (-) True G27439

Expression Profile