RNA id: TU33130


Basic Information

Item Value
RNA id TU33130
length 227
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G26416
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 30903669 ~ 30903895 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cttccggcgcttactcaagacacatctgttcagactctacttgcaatttagtcatttattctcctgtaagattgcactttacaatgttttatcatactgcTTAccttgcgttactaatactcatattgttattttgatttcccctttgctccctttcccattgcccttgactgtgacttaacaacTTGTCTGCaatcatcagcttttacaatccaggatgtaagacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33115 lncRNA downstream 28291 30800411 ~ 30875378 (-) True G26403
TU33076 lncRNA downstream 291976 30610218 ~ 30611693 (-) True G26370
TU33039 lncRNA downstream 449041 30404998 ~ 30454628 (-) True G26342
TU33049 lncRNA downstream 465681 30431806 ~ 30437988 (-) True G26352
TU32901 lncRNA downstream 1295073 29608317 ~ 29608596 (-) True G26231
TU33227 lncRNA upstream 317532 31221427 ~ 31246649 (-) True AMCG00007817
TU33228 lncRNA upstream 340645 31244540 ~ 31246649 (-) False AMCG00007817
TU33235 lncRNA upstream 434950 31338845 ~ 31342792 (-) False AMCG00007822
TU33236 lncRNA upstream 434950 31338845 ~ 31342792 (-) False AMCG00007822
TU33340 lncRNA upstream 781876 31685771 ~ 31686432 (-) True G26598
AMCG00007807 mRNA downstream 73053 30810794 ~ 30830616 (-) True AMCG00007807
AMCG00007803 mRNA downstream 264293 30619418 ~ 30639376 (-) True AMCG00007803
AMCG00007804 mRNA downstream 288784 30613989 ~ 30614885 (-) True AMCG00007804
AMCG00007801 mRNA downstream 394167 30508882 ~ 30509502 (-) True AMCG00007801
AMCG00007795 mRNA downstream 1039058 29799746 ~ 29864611 (-) True AMCG00007795
AMCG00007810 mRNA upstream 12465 30916360 ~ 30924500 (-) True AMCG00007810
AMCG00007811 mRNA upstream 40717 30944612 ~ 30947926 (-) True AMCG00007811
AMCG00007812 mRNA upstream 59149 30963044 ~ 30982020 (-) True AMCG00007812
AMCG00007815 mRNA upstream 199883 31103778 ~ 31111738 (-) True AMCG00007815
AMCG00007814 mRNA upstream 232571 31136466 ~ 31144404 (-) True AMCG00007814
TU31949 other downstream 5272077 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 5638718 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 6635748 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 6931004 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 10430965 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 3965540 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 6336194 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 6591016 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 6663722 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 6667062 37570957 ~ 37571488 (-) True G27439

Expression Profile