RNA id: TU33143



Basic Information


Item Value
RNA id TU33143
length 507
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G26429
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 30945303 ~ 30946095 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTGGAGGTGAGCTTATGAGGAGAATTCTGTTGTCAAGGGTCCGGATAGTCTTCTTGAACCCACAGAGGGCTTCCACCAGCTTGATCTCCATTTTCATGATGAGGTCATCTTCCTGCCTGTGGAACACGGCATGCTCCTTCTGATCCAGAACAATGATGACATCACCAGGTTCCAATCCAGGCTCCTGATCTCCCTCTCCATGGAATGTAATCTTCTGGCCATCCTTCATACCTTGTCAACATGAACTTCAAGgatcttcttcttcctctcaaCTTTGTGCCCATTGCAGGTCTTGCACCGATCTTTGGAGCTGAATCGCTCCCCTTGTCCTTGGCACTCTACACACATACTCTGAATCTGTTGAATCATGCCAGGTCCGATCTGCTGCACCTGGATCTGAACTCCTCTTCCTTTGCAGTTGGAGCATTTCTCTAAAGCTCCTTTCTTGCCACCATACCCTACAGATAATCGGAAGATATTTCAGTCTCAGAGACAGTAATACAAAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU33144 lncRNA upstream 55 30944301 ~ 30945248 (+) True G26430
TU33060 lncRNA upstream 422793 30510535 ~ 30522510 (+) True G26360
TU33009 lncRNA upstream 538656 30402565 ~ 30406647 (+) True G26319
TU32945 lncRNA upstream 1141700 29799757 ~ 29803603 (+) True G26262
TU32935 lncRNA upstream 1170268 29768193 ~ 29775035 (+) False G26258
TU33147 lncRNA downstream 9543 30955638 ~ 30955893 (+) True G26433
TU33175 lncRNA downstream 154176 31100271 ~ 31100516 (+) True G26458
TU33178 lncRNA downstream 157859 31103954 ~ 31106021 (+) True G26461
TU33179 lncRNA downstream 160319 31106414 ~ 31106624 (+) True G26462
TU33180 lncRNA downstream 160619 31106714 ~ 31107249 (+) True G26463
AMCG00007808 mRNA upstream 1576 30941199 ~ 30943727 (+) True AMCG00007808
AMCG00007809 mRNA upstream 29838 30882916 ~ 30915465 (+) True AMCG00007809
AMCG00007805 mRNA upstream 170842 30731611 ~ 30774461 (+) True AMCG00007805
AMCG00007806 mRNA upstream 332111 30610218 ~ 30613192 (+) True AMCG00007806
AMCG00007802 mRNA upstream 337280 30590214 ~ 30608023 (+) True AMCG00007802
AMCG00007816 mRNA downstream 150643 31096738 ~ 31098357 (+) True AMCG00007816
AMCG00007813 mRNA downstream 165550 31111645 ~ 31136247 (+) True AMCG00007813
AMCG00007818 mRNA downstream 324580 31270675 ~ 31302984 (+) True AMCG00007818
AMCG00007820 mRNA downstream 358941 31305036 ~ 31317396 (+) True AMCG00007820
AMCG00007819 mRNA downstream 378987 31325082 ~ 31339183 (+) True AMCG00007819
TU32939 other upstream 1170268 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 1941530 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 2490596 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 2850562 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 6750822 24192221 ~ 24194481 (+) True AMCG00007631
TU33841 other downstream 4665021 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 7198889 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 7222475 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 7409834 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 7485950 38432045 ~ 38436595 (+) True G27551

Expression Profile