RNA id: TU33179



Basic Information


Item Value
RNA id TU33179
length 211
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G26462
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 31106414 ~ 31106624 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TACCTGAAATACACACCGCTGACATTCTCCAGACTCTCATCCACGGCACAGTGGATGGTGGTCTGAGCACCCTCCCATGGGGTCTTGAATAGCAGGATGATCATTGGGAGGGCAATTACCCTCTTCCACCAAGGTAAGGTGGGAAACACGTGTCTCCCCAGCTCAGTGCGAATCACCCCAGGGTGCAAGCTGTTTGCTGTCACCCCTGTAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU33178 lncRNA upstream 393 31103954 ~ 31106021 (+) True G26461
TU33175 lncRNA upstream 5898 31100271 ~ 31100516 (+) True G26458
TU33147 lncRNA upstream 150521 30955638 ~ 30955893 (+) True G26433
TU33143 lncRNA upstream 160319 30945303 ~ 30946095 (+) True G26429
TU33144 lncRNA upstream 161166 30944301 ~ 30945248 (+) True G26430
TU33180 lncRNA downstream 90 31106714 ~ 31107249 (+) True G26463
TU33208 lncRNA downstream 111486 31218110 ~ 31218322 (+) True G26483
TU33260 lncRNA downstream 307530 31414154 ~ 31424691 (+) False AMCG00007827
TU33371 lncRNA downstream 675014 31781638 ~ 31781891 (+) True G26625
TU33398 lncRNA downstream 716116 31822740 ~ 31822973 (+) True G26645
AMCG00007816 mRNA upstream 8057 31096738 ~ 31098357 (+) True AMCG00007816
AMCG00007808 mRNA upstream 162687 30941199 ~ 30943727 (+) True AMCG00007808
AMCG00007809 mRNA upstream 190949 30882916 ~ 30915465 (+) True AMCG00007809
AMCG00007805 mRNA upstream 331953 30731611 ~ 30774461 (+) True AMCG00007805
AMCG00007806 mRNA upstream 493222 30610218 ~ 30613192 (+) True AMCG00007806
AMCG00007813 mRNA downstream 5021 31111645 ~ 31136247 (+) True AMCG00007813
AMCG00007818 mRNA downstream 164051 31270675 ~ 31302984 (+) True AMCG00007818
AMCG00007820 mRNA downstream 198412 31305036 ~ 31317396 (+) True AMCG00007820
AMCG00007819 mRNA downstream 218458 31325082 ~ 31339183 (+) True AMCG00007819
AMCG00007827 mRNA downstream 314586 31421210 ~ 31440378 (+) True AMCG00007827
TU32939 other upstream 1331379 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 2102641 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 2651707 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 3011673 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 6911933 24192221 ~ 24194481 (+) True AMCG00007631
TU33841 other downstream 4504492 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 7038360 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 7061946 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 7249305 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 7325421 38432045 ~ 38436595 (+) True G27551

Expression Profile