RNA id: TU33340


Basic Information

Item Value
RNA id TU33340
length 662
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G26598
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 31685771 ~ 31686432 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgcacgggaaaaaacagcagaacacagcaacagaaagtattaaacaagtataatgctgtttttccaaaGGGTACAAGGAAGTACATAGCTTTTATTCCCATTGTGGGACATAGCCTcaaggggtttgacattttacaaacagtgtctgattggtcatctaaataactatgatagtaatttaattggcattctaaaataagcctacccatctcatcaatactacaattattattcatgaataATTATTATCCTCTAAATTGACAGCTACATTTGGAAGGTCATTTGCCGATAAAAAAGATaggtttgaaacaattaaactttaataagaaacaagtagagaatgtaagttgctgataaacTAAAAAGGAGTAACTGAGAAGTTAGAAAATAACAGGTTCTCATAATTCATTGGAAAGATTGCGGGCAAATTAATAGTTATTTGCTAGAAACCTtcagggtcacagcacacaaagcacagaagctcaaaatgatttatattttcctccACACATTCAATGAAATCGattctgtatttaaaagcataacCCTTAAGTCTCTTAGTTGTATGaagtattttttgtatgattttaaatCTAAACCATTCACACTGATTCAACAGCATCTATGAACacatttaatggaaatgtacagtgagggaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33235 lncRNA downstream 342979 31338845 ~ 31342792 (-) False AMCG00007822
TU33236 lncRNA downstream 342979 31338845 ~ 31342792 (-) False AMCG00007822
TU33227 lncRNA downstream 439122 31221427 ~ 31246649 (-) True AMCG00007817
TU33228 lncRNA downstream 439122 31244540 ~ 31246649 (-) False AMCG00007817
TU33130 lncRNA downstream 781876 30903669 ~ 30903895 (-) True G26416
TU33372 lncRNA upstream 95206 31781638 ~ 31781891 (-) True G26626
TU33393 lncRNA upstream 118527 31804959 ~ 31805927 (-) False AMCG00007835
TU33399 lncRNA upstream 136310 31822742 ~ 31822969 (-) True G26646
TU33438 lncRNA upstream 726848 32413280 ~ 32417500 (-) True G26684
TU33540 lncRNA upstream 1905790 33592222 ~ 33640336 (-) True G26764
AMCG00007824 mRNA downstream 239708 31430316 ~ 31446063 (-) True AMCG00007824
AMCG00007823 mRNA downstream 327380 31355360 ~ 31358391 (-) True AMCG00007823
AMCG00007822 mRNA downstream 343065 31338716 ~ 31342706 (-) True AMCG00007822
AMCG00007821 mRNA downstream 362690 31322734 ~ 31323081 (-) True AMCG00007821
AMCG00007817 mRNA downstream 458132 31192010 ~ 31227639 (-) False AMCG00007817
AMCG00007831 mRNA upstream 14904 31701336 ~ 31727439 (-) True AMCG00007831
AMCG00007836 mRNA upstream 109263 31795695 ~ 31797044 (-) True AMCG00007836
AMCG00007835 mRNA upstream 118467 31804899 ~ 31816151 (-) True AMCG00007835
AMCG00007843 mRNA upstream 692003 32378435 ~ 32378904 (-) True AMCG00007843
AMCG00007842 mRNA upstream 842256 32528688 ~ 32804157 (-) True AMCG00007842
TU31949 other downstream 6054179 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 6420820 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 7417850 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 7713106 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 11213067 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 3183003 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 5553657 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 5808479 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 5881185 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 5884525 37570957 ~ 37571488 (-) True G27439

Expression Profile