RNA id: TU33452


Basic Information

Item Value
RNA id TU33452
length 271
lncRNA type intronic
GC content 0.47
exon number 1
gene id G26698
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 32622260 ~ 32622530 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gttgagctgtggcagcgagtttatggttcaggtgagagagagagagaaagagagagaccgTGTGCTGTTCTTTAtatgtcagatcaataggtgattgagtttgtgagattggatttcggtttcagcccccagtgtcgtattggaggggggcttgatttatgactgatgtcaatccatgccatcttttggaaatgccggttggcacgggttcgtagctctgtgtcgggatttcggctctcgtccatttcaaagagtttttattacctacagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33398 lncRNA upstream 799287 31822740 ~ 31822973 (+) True G26645
TU33371 lncRNA upstream 840369 31781638 ~ 31781891 (+) True G26625
TU33260 lncRNA upstream 1197569 31414154 ~ 31424691 (+) False AMCG00007827
TU33208 lncRNA upstream 1403938 31218110 ~ 31218322 (+) True G26483
TU33180 lncRNA upstream 1515011 31106714 ~ 31107249 (+) True G26463
TU33459 lncRNA downstream 265260 32887790 ~ 32888040 (+) True G26704
TU33593 lncRNA downstream 1167410 33789940 ~ 33794941 (+) False AMCG00007854
TU33616 lncRNA downstream 1366516 33989046 ~ 33990588 (+) True G26826
TU33615 lncRNA downstream 1369648 33992178 ~ 33993982 (+) True G26825
TU33673 lncRNA downstream 1626666 34249196 ~ 34253554 (+) True G26875
AMCG00007837 mRNA upstream 223342 32392605 ~ 32398918 (+) True AMCG00007837
AMCG00007839 mRNA upstream 265614 32325622 ~ 32356646 (+) True AMCG00007839
AMCG00007840 mRNA upstream 402588 32205006 ~ 32219672 (+) True AMCG00007840
AMCG00007838 mRNA upstream 803268 31816243 ~ 31818992 (+) True AMCG00007838
AMCG00007834 mRNA upstream 821596 31794973 ~ 31800664 (+) True AMCG00007834
AMCG00007845 mRNA downstream 727564 33350094 ~ 33357685 (+) True AMCG00007845
AMCG00007846 mRNA downstream 996773 33619303 ~ 33640336 (+) True AMCG00007846
AMCG00007847 mRNA downstream 1023989 33646519 ~ 33647508 (+) True AMCG00007847
AMCG00007853 mRNA downstream 1136173 33758703 ~ 33759842 (+) True AMCG00007853
AMCG00007854 mRNA downstream 1140983 33763513 ~ 33790185 (+) True AMCG00007854
TU32939 other upstream 2847225 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 3618487 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 4167553 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 4527519 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 8427779 24192221 ~ 24194481 (+) True AMCG00007631
TU33841 other downstream 2988586 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 5522454 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 5546040 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 5733399 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 5809515 38432045 ~ 38436595 (+) True G27551

Expression Profile