RNA id: TU33540


Basic Information

Item Value
RNA id TU33540
length 675
lncRNA type inter_gene
GC content 0.28
exon number 2
gene id G26764
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 33592222 ~ 33640336 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tatatttatatatttttatttggactgacacaaaacagaaccaaaaaaaaataaagaaaatcaaagatTGTCAGCACACGTCTCCGTTTTCCAATAACAATCagacacactttttaaaattaacatataaaaacaagaacatattaTGGCTTTCCATACACCATGACATACAGACTGACGAactaactttaaaataaaacatttatcacTTGTATTCATAAGCCCATTCCTTGATATTACAGTAAACACAGATGCCTGAGAAAACACATGGATTGGCTTGGTTGGGAATGTATACTGTCTGTAAGATAAACTGCATTCAGGTAGGATGAGTTTCCCGAGTCTCAGCACACATTTAGGTGTAGCTATGCTCTGAAGGGCTACAGTTACTGCTGCATGCTTTGCAAATGGTTTAAATATTGGACATAGTAAGACATAAAATCATAGTTTTGACAGGTTTATATGAAGTGAGGCAAAATCTAATTCTACAATATGTCTATGATTAAAACTGAGGATCTCCCAGAATTCATTCATAATTTCTCATTAGATCttacaaacatttgtttttggttggaaaactttaaatgtattcacaatgtattattattattattattattattattattattattattattattattattattattattattattattattattattt

Function

GO: NA

KEGG:

id description
ko04725 Cholinergic synapse

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33438 lncRNA downstream 1174722 32413280 ~ 32417500 (-) True G26684
TU33399 lncRNA downstream 1769253 31822742 ~ 31822969 (-) True G26646
TU33393 lncRNA downstream 1786295 31804959 ~ 31805927 (-) False AMCG00007835
TU33372 lncRNA downstream 1810331 31781638 ~ 31781891 (-) True G26626
TU33340 lncRNA downstream 1905790 31685771 ~ 31686432 (-) True G26598
TU33586 lncRNA upstream 85246 33725582 ~ 33725896 (-) True G26800
TU33637 lncRNA upstream 346211 33986547 ~ 33987991 (-) True G26847
TU33638 lncRNA upstream 351799 33992135 ~ 33993958 (-) True G26848
TU33689 lncRNA upstream 549160 34189496 ~ 34223231 (-) True G26883
TU33700 lncRNA upstream 608863 34249199 ~ 34253565 (-) True G26893
AMCG00007848 mRNA downstream 84841 33502320 ~ 33507381 (-) True AMCG00007848
AMCG00007849 mRNA downstream 137786 33426999 ~ 33454436 (-) True AMCG00007849
AMCG00007844 mRNA downstream 377329 33143556 ~ 33214893 (-) True AMCG00007844
AMCG00007842 mRNA downstream 788065 32528688 ~ 32804157 (-) True AMCG00007842
AMCG00007843 mRNA downstream 1213318 32378435 ~ 32378904 (-) True AMCG00007843
AMCG00007851 mRNA upstream 15945 33656281 ~ 33690820 (-) True AMCG00007851
AMCG00007850 mRNA upstream 80158 33720494 ~ 33738367 (-) True AMCG00007850
AMCG00007852 mRNA upstream 115520 33755856 ~ 33757020 (-) True AMCG00007852
AMCG00007855 mRNA upstream 149855 33790191 ~ 33797760 (-) True AMCG00007855
AMCG00007856 mRNA upstream 160234 33800570 ~ 33813933 (-) True AMCG00007856
TU31949 other downstream 7960630 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 8327271 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 9324301 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 9619557 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 13119518 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 1229099 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 3599753 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 3854575 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 3927281 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 3930621 37570957 ~ 37571488 (-) True G27439

Expression Profile