RNA id: TU33638


Basic Information

Item Value
RNA id TU33638
length 1804
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G26848
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 33992135 ~ 33993958 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttaaacaagaaaaaaaacaaactggaaaaggTACTGTTTCCAACATCAGTTCTATGATGATATTCCAGTGGTAAAATTGAAGCAAatgatcattcatattttaaaagacacatTTACAAGAAAACTTCAAATATGCAATGTGAGGACTGGTACAtaaccaaacaaagaaacatttcagCTGGTTAAACTTTTTTCTGATGGGAGCTTCAATGCCGGAGAGGGAAAATCCTTGGGAAACTAGGTCTGAACACACAATGTTAATTAAGGGAAACCTCGTCTTCACAGTCAAGCTTAGGAAATgacattaaattatgttttgtgtttcctttGGAAGCTGCAGTGGACTGATAAGAACAGACAAGTTTGTTGGTTTGAGTCCATCTGACTGCACACTGGCCAAAACAGCCCTACATCTTGTGTGCCCTTCATCTGGGAAAATGCtagcagtttaatttaaaacaaagttttaattataatgaaacacagacttccccccccacacaaaattTTATAGCGGAACAACATCAACAAAGAAAGCAGGTTTGTGGGGAGAGAGCTTCTAGTTATTTGATGGgatttttgtaatgaaaaacataaaatcctGTTCTGATCTTGAGATGTGGTCGAGGAATGGCCAGGCATTTCAACTTCGGGGGAAAAGGAATGGGAAAACTAGACTGATTACAAAACAGATCCTCTTTGTTCCTATGGTCTTTTGAGTGTGTTTACCATCAGTTTTGGATTATTCAAGGTGCCCCATTCTCTAAAAAGTACCAGGACATTGCAAACATCTCCTCACAATTTCACCACTGGCCCCCACTCGACCTAACCAGAGGCTGATTCTCTGgcaacacactgactgaaaaccacaatgcctttcttttttttctattgctttACCCTTCAACAGATTACAGTATGTACaaaaatatggttttgttttctttttcgtttgtttttttacaggcACCTGTAGTTGAACTTACGATTCACACCTTAATTAACCCTCTAAAAGgcagtgatttttaaaatgaggATTTATTGAGTAAGGGATGCAGttatacaaaagcaaaaacaaactgaaagatAACACCCCCCACCAAGAATATAAAACCCTAATTATAAGTGAGATGTCTATGGAGTTATATGATGCATTTCACAGCATTCTACATTTCTCTCCCACCACTGCCTTTACAATACCGCTGATTAGATAGGTTTGAATTTGTTGGtagaaatacaatatattaaattgagCAGTGTATCTGGCCAGCAATAAACTGGCTTTTTCATCAACAGGTGCCTATAATTAACCAAACCTTAACTGTAGGGCTTCCTTCTcgattatttataaaaaaataaaaatttaatgaacaaaaaaagaaaaacgagaacaaaaaaaaaaaaacattatgtttGAGGATGTACAGTAAGAGAAATGATAAAATGATCCCAAATGAACTAGAATTGTTTTGTGAGAAAACCAAGAGACTTCAGATACAGAACTTGGAAGATTATACAGTACCAGCCAAACTGTTCAAACAAATGTTGGTTTTCATTTAGTGACACAGAGCTAAAGGCTTTGGTAAGAAAAGAGTCCATTccaaaatatgaagaaaaaaaaagattgtttcaGTAGATCAAGGCCCCTTATTTGTAGCATGTAGGAATGCCAAGcgaaattaaaactaaaaactgcctggaaatgaaatgtataaacCTCAAGTTCATTATTGCAATTTTATGCATTATAAATTCAACTCTTTAAACCTGAGGTTTGCATATACAACTTTTTGAAGAAAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33637 lncRNA downstream 4144 33986547 ~ 33987991 (-) True G26847
TU33586 lncRNA downstream 266239 33725582 ~ 33725896 (-) True G26800
TU33540 lncRNA downstream 351799 33592222 ~ 33640336 (-) True G26764
TU33438 lncRNA downstream 1574635 32413280 ~ 32417500 (-) True G26684
TU33399 lncRNA downstream 2169166 31822742 ~ 31822969 (-) True G26646
TU33689 lncRNA upstream 195538 34189496 ~ 34223231 (-) True G26883
TU33700 lncRNA upstream 255241 34249199 ~ 34253565 (-) True G26893
TU33753 lncRNA upstream 802211 34796169 ~ 34796853 (-) True G26943
TU33762 lncRNA upstream 822736 34816694 ~ 34816920 (-) True G26952
TU33805 lncRNA upstream 1536972 35530930 ~ 35531438 (-) True G26994
AMCG00007859 mRNA downstream 54055 33922475 ~ 33938080 (-) True AMCG00007859
AMCG00007856 mRNA downstream 178202 33800570 ~ 33813933 (-) True AMCG00007856
AMCG00007855 mRNA downstream 194375 33790191 ~ 33797760 (-) True AMCG00007855
AMCG00007852 mRNA downstream 235115 33755856 ~ 33757020 (-) True AMCG00007852
AMCG00007850 mRNA downstream 253768 33720494 ~ 33738367 (-) True AMCG00007850
AMCG00007862 mRNA upstream 1754 33995712 ~ 33999738 (-) True AMCG00007862
AMCG00007861 mRNA upstream 17152 34011110 ~ 34042896 (-) True AMCG00007861
AMCG00007869 mRNA upstream 802937 34796895 ~ 34804878 (-) True AMCG00007869
AMCG00007874 mRNA upstream 1562292 35556250 ~ 35594137 (-) True AMCG00007874
AMCG00007875 mRNA upstream 1631852 35625810 ~ 35637920 (-) True AMCG00007875
TU31949 other downstream 8360543 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 8727184 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 9724214 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 10019470 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 13519431 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 875477 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 3246131 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 3500953 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 3573659 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 3576999 37570957 ~ 37571488 (-) True G27439

Expression Profile