RNA id: TU33700


Basic Information

Item Value
RNA id TU33700
length 4367
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G26893
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 34249199 ~ 34253565 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACAGTAAAAGCCAATATCTTTACTTTAGTGAATGCATAATACAAATTTGTACAACAATCTCTAGCATAATATTTTAGTCATTCGATAAAAAGTTCATTagaatatttattgtataatgaagataaaacaacacattcagGGAAATAAAACGCAAGATTAACTTAAAATTCTCTCTCTtgatttctgaaacattttgtttcattcatgGCAACAAAGTCCAGCTTGTGCCGCCAAACGGTTTGAGCGTTCAAACCGCAAACAGCTTTTCGAGTGAACTATTAACTACAAACAGTTACCAAAtacatagttattttttttcgtttttttaaaaaaagcaataaagcaaAGCAGTGTAGTCTTGCACAGCAAAGTGAAGAAAGTTTActacaaagtttttttttttcgttttttttttcatatcccTTTCTTTCACATTCGACATTTTTGTGCAAGTTAGATTGATCAGAAATAGCAAACAGACCCAAGGAGTTTGTCGTTCCTATATAGGTTGTCTTTATATTTACTATGTATTTCTTGTGTGCACACAACATAGTCATAACAGCACAAGAGGAGTGGTGGAGGAGAGGGGTGGGTGTCTGTACTCTTCATATATGTTGCTGATCTGTAACAGTTTGTCATACAGTCAGTTCTGTGTCAAACATGGCCTATCAGGTGCTCACCTTGTCTCAAAGTGATACTGCAATGAATTCTTTGGATCAAGACTATATAATAAATCTACAcccacaaaaaaggaaacaataatcCCTGAATGCCAATTAATAGCTACTGATCCAGTTTTAGTTATTgctgctatttttatttatttaagtatgaGCATGAAAAAAACTTTGCATCTTCATTTTTCTGAATTGCTTTCAAAAGGCTTTTCGATGAGGTTCCTATAGTAAACGGTGTCATAAGCATTATAAAATGAAGGTAAATTTTGGTCTAAAGAGTCATCTCTGCTGGTGAACTCCAGGCTAAAAGGATCCTGGCAACAGTCAGTCAGTAGCAGATcgaggaagtgtgtgtgtacatgtgtaggTATATAGAGCTGCCCTAAAATAGAACAAATGAATAGGAGAGaccaacaaaaaacaaggtAGGTAAAAGTATCTACTGGTCTTACACATAAGCACTTGTTATTCAATTGATCATGGTGTGGGaggttagtgtttttttattttattttctgaagtgCATCAGCTGTCATGCGTTGCTTTCCAAAACGAGATGCACAACATCCCAGTTTAATAGAGCAAGCAAGCACTTAAGGGCAAAGGGTTAACAGTCATATTTGCAATTCATCaagaattgtttttgttttttcatttctttttgaaAAGTGTAGGTATGCGCatgtgggtggggggtgtgcGCTCACACGGGTGACGGGATGATTATCTTGTTTGGTCTTTCTCGTCTTTTTAGGAAGTAACCCCGTGTTGTTGGGAAATGGATGGTTTTTAAGTGCAAAGTCTGGGGACTGCATAGATCGATATCAGCATAAAATCAGCTGCTGTGGCGAGGGTGATGGGGAggacgggggggggggatgcCTGTGGTTTTTGATAAAGGCACACAAGGAAATAGACAGCAAATGCAAAGGGATATACTCCTTTAAAACATTGTACAGCAAACTTCACGTACAAGTACATGCGCAATCCAGCGGTTcgattttgtttcttctgtttggatttctctcttttattttaagctGCTTAATTTCCTGCCTCTGCAAACCACTCCGAATTGTGTGATGTAATATTAAACGTTTTAGTGCCTTTCCTCTGCAAAACTAGCTCATTTTTACAGATGAGTTCTAAAGATAGTATCCtaacaaaataaaccttttttaaatgtttacaaaatatctatgaggaattaaactgaaattgagCATTAATTGTCCTATACACTGAGAAGGTTCAACTGTATTCAAACCTGAACagcataaaatacaatttttattataattattattgcacaaatgtaatgcaaattcTTGTAAATGGTGATATTTTATCATATTGTATGGTATTATATCTACAGAGGTCAAATATTGTAGGTATTTTTGGTTCAGACCGGCCCAGGACACGCACACACTTCATACATTTGTATGacgacacacacaaacagaccaTATTTCACAATGTGTATCATATAAATATTATCTGAAAAAAACTCGCTATCTCTAAACTCACAACTTTTTATATCTAATTAATTGAGTTAATAATTTTGAATGGCGAAGGaaaattttgatttttttctacAGTACAtaacatgattgtttttttatttttttataaatgtttgtagaccccccccccagccccacccggaaaaaaaatactttaggAAGTCCTTGTCAGCATTGATAATGACACTAAAGGTTACATAAAACAGAACTTTTAATCTCTGATACGGGGTAATACACTGAACAGCATGTAGACTGTAAAGACTAACAAGAACAACATGTGAACTGGAATTCATTAtgcttttctgttgttattttgttgtggttgtttttctttcgaCTGAAGTTATGATAAAAGCCAAGCCGAGCCGTGTGTGTACGGTCATGTGATTCGAAGTCCTGAAAGTAGGCAGTATATTCAGCAGCTTTTACGCCAATCCCTCATAGAAGGGTATAAGTCGGAATTCCACAGTAAAAACTGTCTCCAGATTTCCTTAAGCTTTGcaattcttctttacaaaaagATACAGTGAAGCTTAACCATACAGCACTGTTATTACAAATTTTAAAGGACAGACATTCACCACCATTAAAGGGAGAACGACCCAGACACTACCCTCTGAAAAAACTCCGGTTATcaacaataattcaaatttgaagAAAGTACagcatatttaacaaaatagtAAATATTAACCAGTGAATACTCTACTTAATAAGGACTTCGCCTTGTAAACTTGGCGTTAATCcacaaaaatatagttttttttttcttaaatctggTGAAGGTACAATACATACGTACTTACACCATAAGTGATATATATTAAAGTTgctatatacacaaacaaaaacaaacaaacaaaacaaaagtttggctcaaatttcaatttacaaacaGAACAGCAACTGTTCATGGCTTCAGTTATTGTTTCAAGGTCTTGCTTGcatgtcattttattgtttctattaaagcaaaacaaaatacaaaatttgaatcaaaaataaaagtcccaaatgaaagaaaaacatccatacctacaaaataaaagtatcaaCATACAGCTTTGgcttaaatatataattcattgcTGAGACTGTGTGAAAGTATTCtaaggttttatatatatatcatgaacGATTGAATTGGGTATGAGGTCTcgtataataaaaaatatatgtaatttatttgtcatttctttctttttcataaaaTTTCAAGGTAAGAGCATAAAACAACCTCTTTTTCAAACATATttccaattttaaattaatatattacttCTCTtaatgcttttgcttttctaaaCTAATATACTTCTGAACCCATGCTGATTCCTTATGCATTTTCCTCTGtgattttaacttttaatttcttctctTCTTCAGAAAATGGGTTGTGGTCAAAGAGATCACCCACTTCAGGTATATCGACTTCTTTTTTGCACATGCAAATAAGATGACAGCCCTCTCCACtcatcacacaaacaaaacacaacagggtGACAACACCACCTCACCCAGAAACCACCTCGAGCCCCTGGGAGAGCCATGGCTTTTCGAGGAGACGATTCCTTCTCCAATCTCTATTTACAGTATTGCTCAGTCCTCTTACAATTCTGAGATCTGCATCTTTTCTCTTCACTCTTACACAAGAATAACAGACGAATTCTTCTCTTTCTAACAAAGTAACTGGGGGTCACACCAGGTTAGACAGGTGAACCCCGCGCTGGGATTTGCAAGCAAGAGTCCCCGTCTGTGGGGACAACCCTTAACTTCCTTTGATTGTTTGTATCTTGCAAacgtaacaaaaaataaaaataagaaataaaaattacataGTAAGTAAGTGCCAGACTGGACCAGTGACTACAATGATCTATTTTaagatgattatttaaaaaacgtTTTCTCTCCCACCCCCCTTTGTAATACATTGGACTCttgcaaatacaatacaatttgcaTCAAGTACCTGATAGCATGATAGCATGAGTCCTATTTGACTCGTGTgatgttctgtgtgtgtatgtgtgtatgtgagaatATTAACTTAGATATGTCAGGACACctttttgtttgtctctttCACTTTTCTAGttacaaaaggaaataaaattaaataataataacaataataatattaataataattcttataATAAAACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33689 lncRNA downstream 25968 34189496 ~ 34223231 (-) True G26883
TU33638 lncRNA downstream 255241 33992135 ~ 33993958 (-) True G26848
TU33637 lncRNA downstream 261208 33986547 ~ 33987991 (-) True G26847
TU33586 lncRNA downstream 523303 33725582 ~ 33725896 (-) True G26800
TU33540 lncRNA downstream 608863 33592222 ~ 33640336 (-) True G26764
TU33753 lncRNA upstream 542604 34796169 ~ 34796853 (-) True G26943
TU33762 lncRNA upstream 563129 34816694 ~ 34816920 (-) True G26952
TU33805 lncRNA upstream 1277365 35530930 ~ 35531438 (-) True G26994
TU33806 lncRNA upstream 1283739 35537304 ~ 35537636 (-) True G26995
TU33808 lncRNA upstream 1297306 35550871 ~ 35552507 (-) True G26997
AMCG00007861 mRNA downstream 206303 34011110 ~ 34042896 (-) True AMCG00007861
AMCG00007862 mRNA downstream 249461 33995712 ~ 33999738 (-) True AMCG00007862
AMCG00007859 mRNA downstream 311119 33922475 ~ 33938080 (-) True AMCG00007859
AMCG00007856 mRNA downstream 435266 33800570 ~ 33813933 (-) True AMCG00007856
AMCG00007855 mRNA downstream 451439 33790191 ~ 33797760 (-) True AMCG00007855
AMCG00007869 mRNA upstream 543330 34796895 ~ 34804878 (-) True AMCG00007869
AMCG00007874 mRNA upstream 1302685 35556250 ~ 35594137 (-) True AMCG00007874
AMCG00007875 mRNA upstream 1372245 35625810 ~ 35637920 (-) True AMCG00007875
AMCG00007876 mRNA upstream 1396279 35649844 ~ 35665471 (-) True AMCG00007876
AMCG00007877 mRNA upstream 1464459 35718024 ~ 35735817 (-) True AMCG00007877
TU31949 other downstream 8617607 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 8984248 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 9981278 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 10276534 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 13776495 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 615870 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 2986524 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 3241346 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 3314052 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 3317392 37570957 ~ 37571488 (-) True G27439

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU34063 True 208 lncRNA 0.37 1 CI01000004 9245751 ~ 9245958 (-)
rainbow trout (Oncorhynchus mykiss) TU34063 True 3415 lncRNA 0.46 1 NC_048565.1 29313133 ~ 29316547 (+)