RNA id: TU33743



Basic Information


Item Value
RNA id TU33743
length 3100
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G26933
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 34790756 ~ 34793855 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ctttatttaaaagaacaaagatAACTGACAGTCAGTCAAAGTACAGATACATCTCAATGAAAACTCTTGGAATGAATATATTGCACAAAGAAATTCCATAATGTTTAACTACACATATATGTGCAAGTTggtgtgagtctgtgtgagtgttCGACTATgtgcagcatttatttatatatataatggatgTTAGATACTTATGCTAAAACttgtatataatttatgaaATGCTGACATCGGATCCCGTGGACTTCATGCACCCCAGTCACATCATTTCCCATAACTAGACGAGCGGAAATAAAGGCATGTTCtcatgcacacatacaacctgtaataaaaatgcatagaCATGTAATAAAATCAAGCGTTTTAATGTTATGAAACATGCATTTAAGTTTTACATTGAATATAAAGAGGAACTGGGGCACTGATAAATACAATAGCAGAATATCATTAAATCAGATAGAAAATGTGTCATCGGTAGCCATGACTGTTGCACTAAAATGGATACTGAACGTGACTGGAGGGGTCGTGACTCCCAATATCTTCCTGTGCGCCGGGCAGCCTGACTGACAGACGACACGGGCAGGTCTCAGGTCTCCGTATCTGTCTGGCCCCTGACTGGAAGAGGGGCGGCGTGAGCTTTTCGGGGTCTGGCTGTGGGTTTTCACTTGCAGGTTGGGAGACAAGTGGAGTGCTCTTCCTTCAggaagagagacacaaacactgacTAGACGTTTGCTCTTGTTCTTCTGATGGCTGCAGTGGCATCCCTGACAAGCCCTGAAGCTGCCCGACAAAGGTCCCATTTCCTCCCCCTGTAGGTGTCGCCATGGAGATGAGAAACTGGGGTATCCTACCACGCAAACCAGGGGCACGTTGTCCTTGACTTATAAGAACACTTAAACAACCATACTGATAAACCCTTTGATGTATAGAGGCAGGATGAAATCGAGGTTAAAAGCAAATAGAACAAATGCAGTCGTTTGAACATATATGTGTGACATAAGAGTACATGTATACATGCACACGCACAAAATATAATGCACATTTCCCTTTTATTAGTGAAGGGTGTAAAGTAAACACAACGCAATGGGTATAATTGCAAAACACTTATTTAGCAGACATCACTATTGCTGTGCTCAAGGCGAAGCCCTGTTGATATATCCGTCATTACCATTTGGATTCAGGGAGGCTGCAGACTCACTGAATTTATCTTGCATTTCTAGCAGTTTAATAGacatttattaaatgcttttagAGAGAGACATGCGGCGCCTGATTACCTCAAATTAGAGATTGAACATAAAAGGCACAAGTTAGCACCAATTTGCAGAGAACTAAGGGGGAGGAACGGCAGAGAATAATAGGACATTATAAACAAGCGATGTCAGTGAAAAGAAAGGCGCATAACTGGTATATGTTCACAAAGTGGGTAAATCTTacgttgtttttttgtttgtttgtttgtttttttacaacttGTTAAACTATTAAATTCCTTACTCTTGCACCTTCATTTGTGGTCATCATTTATTTGACCTCTGATCATTTTTCAACGTCTAGACCACATGCACAGATTTCTGTAGTGTGACTAGTTTGACTCGAAGAAAATCTCTGGGGACCTGATAAActtgtgtaaaatattttagcCCAAGTGTATTCTTAATGTCGAGTAACGGAATCATGTTACAAAGAAAAATCAACGATCCAAAATGCAGTTGTTAAGATGTTATTgatgatgtatgtatgttttctaCGTGTAGTAGCAGTAggagtggtagtagtagtagtagtagtagtaataataataataataataataataataataataataataataataataataacaaccacaaTATATTAAGGGGTGATTCGTTTTCATATAGGCCTACGTTGGTGGGCCTCAGGCTGCATCTATCTTCAATGTACAGAGACGGCATAATTGTGTTTAGATTCATAAATAGTCTGTGTTGAAAATATCATGATGACACTTTGTCTAGTATTCATGCTTGGGTGTCAGCAAAATCAAACAATAGTCATCCAGTGCTTGTTTTCTAAATATCTACATAATGTTGAGAACTATGCCTGCTTAATATAATTACCCCAAATTACATTTCACTACATTGCATCCACCTATTTTACTTAAGACGGATCCCACAGAATATACCATATTGAATAAGGTATGGGAGAACTTGGTTTGGCAAACATTATTCTGCATTAAATCTTTCCAATCGAGGTTACACGTATAATAGGTTAAATATTGAAGGctatgtttctgtttatttttaaattattatttttgtatttttgatgcAGTGGCGTATgaaagtcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatttgtatttgtatagcgcctttcgcagggtagccactgAGCGCTGTAGTGAAAGTGAAGTTCTATGCGCGAAAGTCACGGCAGACTGTTAGAATTGAGATTGTCCTTAACCAGAAACAATGTAGGGACTACTCTTCCTAAATATACACGAGCAGACTTCGCTTATTTCCTTGCATATGTAAACATTGCCATTTTGCTTTCCGGTATAGACTTTCCACTGAAAAGGAGCGGTAGGATATTATTGTCTctgtaacaattaaaaatcaaataggTAAACTAGGCAACGGAGACAAGAGCGCTCTCAATCAATAGGGATGCTATTAGTTAATCCGCTAGTTGCTTCATATCGCTGCAgcatttttttctccaaagaTCTCCCCAAGAAAATAAAGTGACATTGTAGGGGGAGAGCCCATTAGTTCGGTGTCCGGCGCTAATAAAAGAGCAGGAGTGCAAATGGTGGAGTTCAGCCTCAACACACTCTGTCAACTGGAATCAGCCCGGTGTAAATGACTGCAAACTGACTCTGCTCAGACTCAGGGCTCAGGTGACTATTTTTGAGGCGAAATATAATATGCaatgattgtatttgtatgtaagTATTTCTGTATTGCAGTAAAGCACAGGATATACCCCTTTACCTTGCATACACATTGTAATAAATCCATAACTGCAGATTGTGTTACGCTTTCCCCATTCAGTTTTTctcttgattattattat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU33733 lncRNA upstream 164527 34625962 ~ 34626229 (+) True G26923
TU33704 lncRNA upstream 524338 34266121 ~ 34266418 (+) True G26895
TU33673 lncRNA upstream 537202 34249196 ~ 34253554 (+) True G26875
TU33671 lncRNA upstream 537202 34249221 ~ 34253554 (+) False G26875
TU33615 lncRNA upstream 796774 33992178 ~ 33993982 (+) True G26825
TU33744 lncRNA downstream 75 34793930 ~ 34794542 (+) True G26934
TU33745 lncRNA downstream 745 34794600 ~ 34796095 (+) True G26935
TU33761 lncRNA downstream 21305 34815160 ~ 34815389 (+) True G26951
TU33770 lncRNA downstream 75589 34869444 ~ 34869722 (+) True G26960
TU33789 lncRNA downstream 496181 35290036 ~ 35290245 (+) True G26978
AMCG00007867 mRNA upstream 437122 34348487 ~ 34353634 (+) True AMCG00007867
AMCG00007868 mRNA upstream 465340 34271763 ~ 34325416 (+) True AMCG00007868
AMCG00007866 mRNA upstream 541681 34240836 ~ 34249075 (+) True AMCG00007866
AMCG00007865 mRNA upstream 565115 34222899 ~ 34225641 (+) True AMCG00007865
AMCG00007864 mRNA upstream 707435 34065131 ~ 34083321 (+) True AMCG00007864
AMCG00007870 mRNA downstream 428609 35222464 ~ 35228724 (+) True AMCG00007870
AMCG00007871 mRNA downstream 526764 35320619 ~ 35323890 (+) True AMCG00007871
AMCG00007872 mRNA downstream 743706 35537561 ~ 35548907 (+) True AMCG00007872
AMCG00007873 mRNA downstream 817127 35610982 ~ 35620717 (+) True AMCG00007873
AMCG00007878 mRNA downstream 1017871 35811726 ~ 35815067 (+) True AMCG00007878
TU32939 other upstream 5015721 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 5786983 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 6336049 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 6696015 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 10596275 24192221 ~ 24194481 (+) True AMCG00007631
TU33841 other downstream 817261 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 3351129 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 3374715 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 3562074 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 3638190 38432045 ~ 38436595 (+) True G27551

Expression Profile