RNA id: TU33745


Basic Information

Item Value
RNA id TU33745
length 1496
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G26935
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 34794600 ~ 34796095 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGCATATGAATACAaactatttataatattaatcattaatcGGCACATTCGGGTTCgttttgttcaaatgttttttaaacacacttgTTAAAAGTCTGCTCCACATACTGCAtatgactgttttgttttcttaaaacgAGGATCTAGTAAAGATGGCAAAGGCGGACTATTCGTGCTTCATATGATTGAATCTGTATATCCAAGTCCACAAGTGGAAACTGCTGTTCCTGTACCAGCAACTCAAACCAAACCACGAACTTCATGCACGTCGATAGGTTCAGTGCGAGTCTGAAATACACTTTACACGCAAAGTGCAATCGCAGATTTGGAAATCCAGAAGGTTAGTTTAGGATTCCGCGCATATGGGATAtagttagaaaatataaataagataaCCGGCACCTTTACGCAAACGGTGAATTAATACTCATAAGCAAAACACAAGCCTGTCTCTCTGCAAGCTTTCCAGCGGAAAAACGAGCCCATACAGACTTTTAAGGGAGATTCTGCTACAAAATGTTTTCCCCGAAGACCCCCTCATGTTTAATGACAAAATAACCCAGGATCTGCTCATTCCTGCTGCTAATAGTTTTATTGGGGGCTCTGCGTCCAGATGGAGGGGGTCCCCTTTGCTTCTGCAATGTGGTTTCTATTACTCAACGCTGCTTTGCTCCGGAGAGCCGCAGCTTGCATGGCATTGCAAGACGCCATATTGACTCAACTAATAGGACAGCAAGTCAAAAGCGAGCTTAAAGGCATACTTTCACACGCCTGATCTCCCATTACAAACACCCcgaaaatacaatttaacacacGGGTTTAATAGTGGCGAGTTAACAGGGGGAGATGTGGGAGCAAAATCACGGTCGCCTTCCTTATTTTGTATCGCATTTTGACACTAAATCGGAGTTTGCATCTAATGGAAACAAGAGGTAGCATCTTCTCTCAGAGTCGCTTGGagacacattgtattttaaatccaGGAGATGGGGGGTGGTTTTGGGATGGCTGTTATGTGCTGCAGAagaagcaataataattataagtgGCTCAAGCAGGatcactgaaaaatatatttcagaggGAAATGATTCCTTCACTACCACATCACTTATATATAAACTATTGTTGTATTAGACGtattattatactattttatacatatgtaaCACGGTGTGTGTATCACCAGCAattatgaaatgtgtatttgttttgctctggtCGGTCAAAACAAGCTAAATCCATGTAGGTttcagacattattattattattattattattattattattagtagtagtagtagtagtagtagtagtagtagtagtagtagtagtagtagtattgataCCCGAATCAAAAtgacaattacaataaaaatctaCAAAATCCTTGAGATGTATACAGGAGTACTCGCATGGGTATTAAAGGAACCCAGTATAAAACGCCAACTCTGAGATTAACCCGACCCACACTCTCCTTTTCTTAGTTTTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33744 lncRNA upstream 58 34793930 ~ 34794542 (+) True G26934
TU33743 lncRNA upstream 745 34790756 ~ 34793855 (+) True G26933
TU33733 lncRNA upstream 168371 34625962 ~ 34626229 (+) True G26923
TU33704 lncRNA upstream 528182 34266121 ~ 34266418 (+) True G26895
TU33673 lncRNA upstream 541046 34249196 ~ 34253554 (+) True G26875
TU33761 lncRNA downstream 19065 34815160 ~ 34815389 (+) True G26951
TU33770 lncRNA downstream 73349 34869444 ~ 34869722 (+) True G26960
TU33789 lncRNA downstream 493941 35290036 ~ 35290245 (+) True G26978
TU33804 lncRNA downstream 754747 35550842 ~ 35552503 (+) True G26993
TU33809 lncRNA downstream 760050 35556145 ~ 35559559 (+) True G26998
AMCG00007867 mRNA upstream 440966 34348487 ~ 34353634 (+) True AMCG00007867
AMCG00007868 mRNA upstream 469184 34271763 ~ 34325416 (+) True AMCG00007868
AMCG00007866 mRNA upstream 545525 34240836 ~ 34249075 (+) True AMCG00007866
AMCG00007865 mRNA upstream 568959 34222899 ~ 34225641 (+) True AMCG00007865
AMCG00007864 mRNA upstream 711279 34065131 ~ 34083321 (+) True AMCG00007864
AMCG00007870 mRNA downstream 426369 35222464 ~ 35228724 (+) True AMCG00007870
AMCG00007871 mRNA downstream 524524 35320619 ~ 35323890 (+) True AMCG00007871
AMCG00007872 mRNA downstream 741466 35537561 ~ 35548907 (+) True AMCG00007872
AMCG00007873 mRNA downstream 814887 35610982 ~ 35620717 (+) True AMCG00007873
AMCG00007878 mRNA downstream 1015631 35811726 ~ 35815067 (+) True AMCG00007878
TU32939 other upstream 5019565 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 5790827 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 6339893 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 6699859 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 10600119 24192221 ~ 24194481 (+) True AMCG00007631
TU33841 other downstream 815021 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 3348889 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 3372475 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 3559834 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 3635950 38432045 ~ 38436595 (+) True G27551

Expression Profile