RNA id: TU33753


Basic Information

Item Value
RNA id TU33753
length 685
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G26943
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 34796169 ~ 34796853 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCACAGGTCGCTAACCTATTTTACATTtggtatatataaatgtaaatgtttttgattgtaTAGATATAATCTGTGCATTCAGTACAATAgcccttgtatttaaaaaaatgaaaaataaaaaaggttcaATAATAAGACTTAACAGGGTGAGCTGGTCTGGAGGAGGGTagctattttgttttagtgttttgctCCTTTTTGGTCTGTAACAGAtgccttgtgtgtgtgaaagcttGCAATTTTGTCCTTGTTTTGAGGCTTTTCTACACCACACACGACACCATGTTGTGGTTGGATAAAAAGGGATCATTTTGTATAGCCGATTGAACAGTGATCTTTGGCTGTTCTTATGCCACATATGGACCAGAGAATGATACATGATTGTAATTATGAACAGTTTAAACAACTGACCCacgtttttatatataaatatataaaaatatattactgcAGGGTATTGATAACGTATagatacttttttaattattattatgattatgattatgattattattattattattattattattattattaattgcaaGTGATATacgtgagtgtgtgtggaaGTTTATAGTTGAAAACaattcctgtttgtttgtgttagcTTATTGTAAACAAGCATTCTGTTGTAAATTTGTTCTTggtattaaattataatttatgaatttgaaatcaaaa

Function

GO:

id name namespace
GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33700 lncRNA downstream 542604 34249199 ~ 34253565 (-) True G26893
TU33689 lncRNA downstream 572938 34189496 ~ 34223231 (-) True G26883
TU33638 lncRNA downstream 802211 33992135 ~ 33993958 (-) True G26848
TU33637 lncRNA downstream 808178 33986547 ~ 33987991 (-) True G26847
TU33586 lncRNA downstream 1070273 33725582 ~ 33725896 (-) True G26800
TU33762 lncRNA upstream 19841 34816694 ~ 34816920 (-) True G26952
TU33805 lncRNA upstream 734077 35530930 ~ 35531438 (-) True G26994
TU33806 lncRNA upstream 740451 35537304 ~ 35537636 (-) True G26995
TU33808 lncRNA upstream 754018 35550871 ~ 35552507 (-) True G26997
TU33838 lncRNA upstream 798577 35595430 ~ 35603175 (-) True G27023
AMCG00007861 mRNA downstream 753273 34011110 ~ 34042896 (-) True AMCG00007861
AMCG00007862 mRNA downstream 796431 33995712 ~ 33999738 (-) True AMCG00007862
AMCG00007859 mRNA downstream 858089 33922475 ~ 33938080 (-) True AMCG00007859
AMCG00007856 mRNA downstream 982236 33800570 ~ 33813933 (-) True AMCG00007856
AMCG00007855 mRNA downstream 998409 33790191 ~ 33797760 (-) True AMCG00007855
AMCG00007869 mRNA upstream 42 34796895 ~ 34804878 (-) True AMCG00007869
AMCG00007874 mRNA upstream 759397 35556250 ~ 35594137 (-) True AMCG00007874
AMCG00007875 mRNA upstream 828957 35625810 ~ 35637920 (-) True AMCG00007875
AMCG00007876 mRNA upstream 852991 35649844 ~ 35665471 (-) True AMCG00007876
AMCG00007877 mRNA upstream 921171 35718024 ~ 35735817 (-) True AMCG00007877
TU31949 other downstream 9164577 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 9531218 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 10528248 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 10823504 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 14323465 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 72582 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 2443236 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 2698058 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 2770764 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 2774104 37570957 ~ 37571488 (-) True G27439

Expression Profile