RNA id: TU33761


Basic Information

Item Value
RNA id TU33761
length 230
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G26951
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 34815160 ~ 34815389 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGGggatggcttttgttttttcttcacacattaagtttctaaaaaatgtttttttttttttttacagaaatctCTAGGCTCTGCAAAAGTTCCTCATATCAGTTACAGTCAAATTGAATAGGATTATGGTTTTATTCTACACAGAACCCTGGCATGCTGCCCAAGTATGTTGTAATTTGTTCGACAATACTTTCAGCCTTAAAACAACATGGTTGCCTCAGGATGGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33745 lncRNA upstream 19065 34794600 ~ 34796095 (+) True G26935
TU33744 lncRNA upstream 20618 34793930 ~ 34794542 (+) True G26934
TU33743 lncRNA upstream 21305 34790756 ~ 34793855 (+) True G26933
TU33733 lncRNA upstream 188931 34625962 ~ 34626229 (+) True G26923
TU33704 lncRNA upstream 548742 34266121 ~ 34266418 (+) True G26895
TU33770 lncRNA downstream 54055 34869444 ~ 34869722 (+) True G26960
TU33789 lncRNA downstream 474647 35290036 ~ 35290245 (+) True G26978
TU33804 lncRNA downstream 735453 35550842 ~ 35552503 (+) True G26993
TU33809 lncRNA downstream 740756 35556145 ~ 35559559 (+) True G26998
TU33836 lncRNA downstream 780024 35595413 ~ 35603182 (+) True G27021
AMCG00007867 mRNA upstream 461526 34348487 ~ 34353634 (+) True AMCG00007867
AMCG00007868 mRNA upstream 489744 34271763 ~ 34325416 (+) True AMCG00007868
AMCG00007866 mRNA upstream 566085 34240836 ~ 34249075 (+) True AMCG00007866
AMCG00007865 mRNA upstream 589519 34222899 ~ 34225641 (+) True AMCG00007865
AMCG00007864 mRNA upstream 731839 34065131 ~ 34083321 (+) True AMCG00007864
AMCG00007870 mRNA downstream 407075 35222464 ~ 35228724 (+) True AMCG00007870
AMCG00007871 mRNA downstream 505230 35320619 ~ 35323890 (+) True AMCG00007871
AMCG00007872 mRNA downstream 722172 35537561 ~ 35548907 (+) True AMCG00007872
AMCG00007873 mRNA downstream 795593 35610982 ~ 35620717 (+) True AMCG00007873
AMCG00007878 mRNA downstream 996337 35811726 ~ 35815067 (+) True AMCG00007878
TU32939 other upstream 5040125 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 5811387 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 6360453 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 6720419 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 10620679 24192221 ~ 24194481 (+) True AMCG00007631
TU33841 other downstream 795727 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 3329595 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 3353181 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 3540540 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 3616656 38432045 ~ 38436595 (+) True G27551

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00027117 False 11615 lncRNA 0.32 1 NC_007129.7 23877428 ~ 23889042 (+)
tiger barb (Puntius tetrazona) TU183150 True 2129 lncRNA 0.37 1 NC_056716.1 2839203 ~ 2841331 (+)