RNA id: TU33789


Basic Information

Item Value
RNA id TU33789
length 210
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G26978
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 35290036 ~ 35290245 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gATATCTTTcctgaagtgtggagcccagaactgtccacagtatccagatgagctctaactagtgcattgtacagtctgaacatcactgcccttgttctcaattctacacttttgacaatataccctaacatcctgtttgtcttttttattgcttccccacattgtttggatggagaaagtcaggagtccacgtagactcctagatctttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33770 lncRNA upstream 420314 34869444 ~ 34869722 (+) True G26960
TU33761 lncRNA upstream 474647 34815160 ~ 34815389 (+) True G26951
TU33745 lncRNA upstream 493941 34794600 ~ 34796095 (+) True G26935
TU33744 lncRNA upstream 495494 34793930 ~ 34794542 (+) True G26934
TU33743 lncRNA upstream 496181 34790756 ~ 34793855 (+) True G26933
TU33804 lncRNA downstream 260597 35550842 ~ 35552503 (+) True G26993
TU33809 lncRNA downstream 265900 35556145 ~ 35559559 (+) True G26998
TU33836 lncRNA downstream 305168 35595413 ~ 35603182 (+) True G27021
TU33840 lncRNA downstream 318178 35608423 ~ 35608637 (+) True G27025
TU33874 lncRNA downstream 517123 35807368 ~ 35842842 (+) True G27052
AMCG00007870 mRNA upstream 61312 35222464 ~ 35228724 (+) True AMCG00007870
AMCG00007867 mRNA upstream 936402 34348487 ~ 34353634 (+) True AMCG00007867
AMCG00007868 mRNA upstream 964620 34271763 ~ 34325416 (+) True AMCG00007868
AMCG00007866 mRNA upstream 1040961 34240836 ~ 34249075 (+) True AMCG00007866
AMCG00007865 mRNA upstream 1064395 34222899 ~ 34225641 (+) True AMCG00007865
AMCG00007871 mRNA downstream 30374 35320619 ~ 35323890 (+) True AMCG00007871
AMCG00007872 mRNA downstream 247316 35537561 ~ 35548907 (+) True AMCG00007872
AMCG00007873 mRNA downstream 320737 35610982 ~ 35620717 (+) True AMCG00007873
AMCG00007878 mRNA downstream 521481 35811726 ~ 35815067 (+) True AMCG00007878
AMCG00007881 mRNA downstream 570386 35860631 ~ 35931488 (+) True AMCG00007881
TU32939 other upstream 5515001 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 6286263 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 6835329 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 7195295 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 11095555 24192221 ~ 24194481 (+) True AMCG00007631
TU33841 other downstream 320871 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 2854739 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 2878325 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 3065684 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 3141800 38432045 ~ 38436595 (+) True G27551

Expression Profile