RNA id: TU33804


Basic Information

Item Value
RNA id TU33804
length 1662
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G26993
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 35550842 ~ 35552503 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAATGCTGTCCATTGATGTACAGAGTCATGACAGCTTCTCTTGTAGCATGGGCACTGCTAACTCGCTTGCAACTAAGACACTTGTGGTGTTTGTGGCATCGTTGCCTTGTTTTGGTCAAGTGATTCCATTGTTGTGATGTGTCAACGCTAccaggtgtctgtctgtctgtacgAGGGCAGGTCGGGGTTCGGGGGAAGCATTACAGAAGCTACACCAGCGTTTAAACCTCCATAGCAGTAATGCGCTTCTTTTTCGCAACCGACATTGCAGGATAGTTCGTCTGGCTGTTTTGCAGATCTGTGGAGATGTCTTCTGTCCTGCAAATTGGACATCGCGAGGAGCTCATCTCCCTGTCTCCGATTTGTGCAAATTGGAGACAGTGAGACGAGCTGCTCCTGCTACTGTGTAGGACAGGCCTGATCTATGTCAGTAAACCGGTTCAGATGCCTGAAACCCACTCctacttctgtttttcctttgtgtcaTTTGTCATGTACACCAGACATGCAGATTtaaatcatttgcatttttctccaAGGCTCAGCTGTAAAGCACCCAAGTTCAGAGACGTGCTTAACGGTGATAAATCGCATGCCCCCATTCATTGGCAGATGCACTGAATCCTATACATACACCTTTACGGTCTGGGCAGCGATGCGCAGCCTTTtgggtggggaaaaaaaaacaaccttatAACTGCACTTACTGCTGGCTGTTCTTTCTTGCATACCAATTATTGTGCTGTAACATATGGGATGCATGTTAAAGTCAAGTGTAATCCATTACTTAAGGAATTGGACTCACAGATTCAACCATTTAATTACCTGGCTTTTGAGGTAAAGGCCTGTTATTTCTTAGTCACCTCGAGTTTTATCGGTCTTTTCTGGTGCTTAGTTATTGCTATGGAAGGATTTACTGGTGCACTCGAAAATGAATGCAGATAATtcatgacaagaaaaaaaaaaagtaatcgtAACATTGAAACTTGTGTTACtttgtgtaatttatattgTCTAAATGATAAATGGATCTTCATGTTAAACCCATGTGATTGTACATAAAGTTGTAAGTTGTTCAGTTGTGAAAGAATAGTGTGTTACCTGTTGTGTTGAAACATTTCTTCTACAATTTTTCTGGGGGGAGGGCATGGGGGGTTGGTGAATGTGACCTTtttgatttaaagaaaaggatGTGCTAAAAACAGGTGTATCACAGTACTGTAAGACCATTGCTGCTTGTCCACTCGCATTACTGCTACAGAAATGTTATTTCTTGCTGTACTGATTGGGAATGGGTTGGCTTTTAGGTAGATTTTTCTGGGGGGAGCAATTGGGAGCAATCATTCTGATAACGCAACATCCAAAAATATCTGATGGTAAAACTTGTAACAGCTAAACTGTACAGAACAAGAGTTTGGGTCTGACAGCACTGGGatattcctgtttttattttatttaacaagaaAAGAAGCACTTTATGATTTAGAGTTCTCTTTTATTTAGCCGTTTGGTTGTAACTTGATTGTGAATAGAGGTCATCCTGACTGGTATTGCTcaagaaaaagggaaataaaccGAACTAATGTAAAAAGATAGGGAGGGGGAGCAGAGGCCCCGGCAAGATCAAATGTTTGTATGTAGGACGAGAGCGGCTTGTCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33789 lncRNA upstream 260597 35290036 ~ 35290245 (+) True G26978
TU33770 lncRNA upstream 681120 34869444 ~ 34869722 (+) True G26960
TU33761 lncRNA upstream 735453 34815160 ~ 34815389 (+) True G26951
TU33745 lncRNA upstream 754747 34794600 ~ 34796095 (+) True G26935
TU33744 lncRNA upstream 756300 34793930 ~ 34794542 (+) True G26934
TU33809 lncRNA downstream 3642 35556145 ~ 35559559 (+) True G26998
TU33836 lncRNA downstream 42910 35595413 ~ 35603182 (+) True G27021
TU33840 lncRNA downstream 55920 35608423 ~ 35608637 (+) True G27025
TU33874 lncRNA downstream 254865 35807368 ~ 35842842 (+) True G27052
TU33907 lncRNA downstream 350541 35903044 ~ 35903259 (+) True G27079
AMCG00007872 mRNA upstream 1935 35537561 ~ 35548907 (+) True AMCG00007872
AMCG00007871 mRNA upstream 226952 35320619 ~ 35323890 (+) True AMCG00007871
AMCG00007870 mRNA upstream 322118 35222464 ~ 35228724 (+) True AMCG00007870
AMCG00007867 mRNA upstream 1197208 34348487 ~ 34353634 (+) True AMCG00007867
AMCG00007868 mRNA upstream 1225426 34271763 ~ 34325416 (+) True AMCG00007868
AMCG00007873 mRNA downstream 58479 35610982 ~ 35620717 (+) True AMCG00007873
AMCG00007878 mRNA downstream 259223 35811726 ~ 35815067 (+) True AMCG00007878
AMCG00007881 mRNA downstream 308128 35860631 ~ 35931488 (+) True AMCG00007881
AMCG00007884 mRNA downstream 465184 36017687 ~ 36019684 (+) True AMCG00007884
AMCG00007888 mRNA downstream 732480 36284983 ~ 36294189 (+) True AMCG00007888
TU32939 other upstream 5775807 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 6547069 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 7096135 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 7456101 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 11356361 24192221 ~ 24194481 (+) True AMCG00007631
TU33841 other downstream 58613 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 2592481 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 2616067 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 2803426 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 2879542 38432045 ~ 38436595 (+) True G27551

Expression Profile