RNA id: TU33805


Basic Information

Item Value
RNA id TU33805
length 509
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G26994
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 35530930 ~ 35531438 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGCGGCGGAACCGAGTGCAGACGGAGCCCGATCCACCAAGAGCGAAtgcaacaaaaaatgaaaggcAATCTGCAGAGCTGTAACAATCCACAGCAAGAGACACAAATGAACCCCGTTGTTCAGCTGGGTGGACAATATGGTAACCTTCTGTGCATGGTGTCTGCAGTGGCAGTATTCCAGATCAGGGGTGTGCAATGAAAGTGATTTCGCACAAGATCGGTCGCCTATAGCTGAGCTGCAGAAACAGGTCTGGTCAACTGTGAGGTGTTACAGCGGCGGTGGTTCAGGCTGGCGGTGTTACTGGGGAATTGTGCATTGAATGCGCCTCCAGAATGTGTATCTCGCCAATGTGAgcttttcaatatatatttctatggcacatttgtttaatgaaaatagaGATTGTCTTTAGCTTTGTAAGTCCCgtactgtttctttttcttttccatcgCAAGCTCTAGAATATAACGCTGAGGGGCACCAGTGGTGATCCCACACGTGCTCCTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33762 lncRNA downstream 714010 34816694 ~ 34816920 (-) True G26952
TU33753 lncRNA downstream 734077 34796169 ~ 34796853 (-) True G26943
TU33700 lncRNA downstream 1277365 34249199 ~ 34253565 (-) True G26893
TU33689 lncRNA downstream 1307699 34189496 ~ 34223231 (-) True G26883
TU33638 lncRNA downstream 1536972 33992135 ~ 33993958 (-) True G26848
TU33806 lncRNA upstream 5866 35537304 ~ 35537636 (-) True G26995
TU33808 lncRNA upstream 19433 35550871 ~ 35552507 (-) True G26997
TU33838 lncRNA upstream 63992 35595430 ~ 35603175 (-) True G27023
TU33928 lncRNA upstream 471755 36003193 ~ 36005750 (-) False AMCG00007883
TU33930 lncRNA upstream 478038 36009476 ~ 36010995 (-) False AMCG00007883
AMCG00007869 mRNA downstream 726052 34796895 ~ 34804878 (-) True AMCG00007869
AMCG00007861 mRNA downstream 1488034 34011110 ~ 34042896 (-) True AMCG00007861
AMCG00007862 mRNA downstream 1531192 33995712 ~ 33999738 (-) True AMCG00007862
AMCG00007859 mRNA downstream 1592850 33922475 ~ 33938080 (-) True AMCG00007859
AMCG00007856 mRNA downstream 1716997 33800570 ~ 33813933 (-) True AMCG00007856
AMCG00007874 mRNA upstream 24812 35556250 ~ 35594137 (-) True AMCG00007874
AMCG00007875 mRNA upstream 94372 35625810 ~ 35637920 (-) True AMCG00007875
AMCG00007876 mRNA upstream 118406 35649844 ~ 35665471 (-) True AMCG00007876
AMCG00007877 mRNA upstream 186586 35718024 ~ 35735817 (-) True AMCG00007877
AMCG00007880 mRNA upstream 308715 35840153 ~ 35852765 (-) True AMCG00007880
TU33771 other downstream 661123 34869435 ~ 34869807 (-) True G26961
TU31949 other downstream 9899338 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 10265979 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 11263009 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 11558265 23971671 ~ 23972665 (-) True G25026
TU34246 other upstream 1708651 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 1963473 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 2036179 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 2039519 37570957 ~ 37571488 (-) True G27439
TU34329 other upstream 2041596 37573034 ~ 37588525 (-) True G27442

Expression Profile