RNA id: TU33809


Basic Information

Item Value
RNA id TU33809
length 2863
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G26998
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 35556145 ~ 35559559 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TATATCGATATTTAAAACGTGCGagtaaaataaagttgaaaataTCCACAACTCTGCAgactaagaaaaatatattgaaataatgcaTACGAAAGAAATATCTCAAGAACTCTCTTTAATAAATCCTCAGAGGACAATGGTTTACAATGTAGGAaaaatttaatacatataggactataaacaacatatttacagCAAAACTCACTTAACAGTGGCTTtttcacaaatataaattattttttcttcaaagttcttttattttcttattttttttaagactacACATCGGTGTAatcctggagaaaaaaaaaaaagcaaatgagaAAGAAGGGGCTGTTGGCAATGACTCGTCTTCACCTCTTGTAACAATAGaagtgtctgtgtctttctgcTGAGGTGTAGTATGCCGTTTCTTCTGTGCAGCTGCATGGTTTTATTCCAGGCGAGGTGTGGGAAAGCCAGCCTCTAAAATTCATGATCAACACTGGGCTGAATCTTTGGGACCTGTAGAAACTGGGCGACACGTACCAGATTTTGCAGTCCATTCCATGCCCCTCACACAATCCATACATAGTAAGTTGCTGTCCTATCAATTAATACTGCATTAATTCCGTATTGTGACAATATCAATATTCAAACACACATTGACGACAATATATCACAAGGATATAAGGCACAGCTGGAAAAGCACACTACAACTTCGAACATTTAACACTTAACCTGGTCAAGACTGCATGTCATATggcactgaaatgtatttaagattaGCAACAGCCATTTCAATCACGTTGAAAAAGGTCTATTTATCCCATTTTGAATTCCATCAAGGTTGTTTTCCCTTGCACTGAAAAATCATTGGAGTACAAAAGAAACGGCCTTCTCAAAGAtctatagattaaaaaaaaaagaacatgtattaaatatctatatatccCACAACAAGGACACGTTTTCCTTCCAATAATCATTTACCTGTTGCTACAGAAATACTCAGAATAAAGGAATTTACAACTaatgttacacatttcctgtaaCTGAAATACTGTACTTTCAGTGCAAGAGGAGCTTTAAAAAGTACCACATTCATATTGTTAGCTTTTTGTTTCGACGATGGTATTAAAAGATGTTGCAACAGCTCATCTTTCAAACACCAGAAAATATgatttaagaataaatacatttagaacagcagttttaaagtagtgttttttttgtgtgtatacagacacatacatacacacacacacgcacatatatatatgtatatatatatatatatatattacacacacacacattgccagtgaaaaatattttttggaaagaaaaaatataggCTTTTAACTGggctaaaaatacattatcttgAGATAGAATTCTAGTGTCTTTAAACTTCCTAGTGAGGTCTGTGACAACCTCAAATACTGGGTAGTACCTGCATGTCAAGGTTGACATTAGCATTCAGCTTCATGGATGGCTTAATTAAGATTAGTAACTGATTAGACAAATAAACTATAGCTTAATGACAGGAAAGTGCGGtcaatgcatttcataaatCTGAGCGCAGCAATGACGAGTGTCACTTTTATCGAAATATTCAAAGTTATCTGGATAattaaaaggagaaaataaagataTTTGCTCTCTGAAAAAGGATAGGCAGTGCATCTGACAAACGGTTTCATCTTTTCACCTTTTTTCCACTAGAATATAAATAAGGTGCAAATATTAAAAGAGTATTTGagaattataaacaaaacaaaaacattgcatctgcctttaaaatcaaattataataTATCTTATCAAtctgtgtgtaatttttttatatatatatcaaatcaaACTGTAAAGagacaaatgttttccattcacATTCATCTGACCTCATTGATAGAGACTTACACTAGCAGGCTGGATAAACATTTGTCCCCATAATGAACCGTTCTTTGGTGCCTCCAACCCCAAAAATCAAGACAATAGAtttgacagagaaaaaaaaaatctacatatgaacaaaataacaacTTAGGAAATACATCAGTGACATCCAATTGAAtactttcaaaatcaaaagccACGCGTTTTGAGGCACTTTCACATTCTGACCCTGGCCCAGTAATAAAGGCAAAACCAACTCCCAACACAACAGTCCACAGGACTCACCACATTGACATCCTTCTTGTTCATAGCAAACACATAGAAAGATCGTTATGTTtatcatgttctttttttatgatCTGCTCTCTAGCATAATGATCTTTCCAGTTGAATTCAAGCACAGGGTATATAAACCATTTTTAGACTTCCATCTGTGCCCATCACATAACCACAGCCACAGGTATGTGAAAAAGTCAATACAAAACGGAGAGGATTAGTCCGCTGGTAAATAGAGCTTTGTCTTTTCgctctcttcttctctctttctGGGTCACCAGATTAAAAACTGGCAACTTCAAAGCAAAGAAGAGTCTAATTCAAAGTCAAGCCATGACTGGTATTTAGCAGCATTGATCTCTTCTCCAGTATCCTCAATCCTTACTGGTTGCGAGTTTAGCCACCGACGTCTATGTTTTTCTGGCGTTCCAGTTGAAGTCAGGGGTTCCTTTCTGTTCTCCAGTCCTTTCTTGTGGAGACCGAGAGTCATGTGGGGATTTCTGGGACGGTGGGGATCGGGGGTCCAGCAAGGCAGGAGGCGGTTTGTAGTCCGCTGGTTTGTCAGTGTGGAAAGGGCGATAGTGTTCTGGCCCCCCCGGGCCGTGGTTGCCCTGAGCTCTGTGTTCAGGCATCCGTCTGAAGTCCTGGCTGCCACCTTGGTGGTAGTTCTGAGAGCGAAATTCATCTGAGCGCCTTCGCTTCGGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33804 lncRNA upstream 3642 35550842 ~ 35552503 (+) True G26993
TU33789 lncRNA upstream 265900 35290036 ~ 35290245 (+) True G26978
TU33770 lncRNA upstream 686423 34869444 ~ 34869722 (+) True G26960
TU33761 lncRNA upstream 740756 34815160 ~ 34815389 (+) True G26951
TU33745 lncRNA upstream 760050 34794600 ~ 34796095 (+) True G26935
TU33836 lncRNA downstream 35854 35595413 ~ 35603182 (+) True G27021
TU33840 lncRNA downstream 48864 35608423 ~ 35608637 (+) True G27025
TU33874 lncRNA downstream 247809 35807368 ~ 35842842 (+) True G27052
TU33907 lncRNA downstream 343485 35903044 ~ 35903259 (+) True G27079
TU33921 lncRNA downstream 427742 35987301 ~ 36000934 (+) True G27089
AMCG00007872 mRNA upstream 7238 35537561 ~ 35548907 (+) True AMCG00007872
AMCG00007871 mRNA upstream 232255 35320619 ~ 35323890 (+) True AMCG00007871
AMCG00007870 mRNA upstream 327421 35222464 ~ 35228724 (+) True AMCG00007870
AMCG00007867 mRNA upstream 1202511 34348487 ~ 34353634 (+) True AMCG00007867
AMCG00007868 mRNA upstream 1230729 34271763 ~ 34325416 (+) True AMCG00007868
AMCG00007873 mRNA downstream 51423 35610982 ~ 35620717 (+) True AMCG00007873
AMCG00007878 mRNA downstream 252167 35811726 ~ 35815067 (+) True AMCG00007878
AMCG00007881 mRNA downstream 301072 35860631 ~ 35931488 (+) True AMCG00007881
AMCG00007884 mRNA downstream 458128 36017687 ~ 36019684 (+) True AMCG00007884
AMCG00007888 mRNA downstream 725424 36284983 ~ 36294189 (+) True AMCG00007888
TU32939 other upstream 5781110 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 6552372 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 7101438 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 7461404 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 11361664 24192221 ~ 24194481 (+) True AMCG00007631
TU33841 other downstream 51557 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 2585425 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 2609011 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 2796370 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 2872486 38432045 ~ 38436595 (+) True G27551

Expression Profile