RNA id: TU33838


Basic Information

Item Value
RNA id TU33838
length 767
lncRNA type inter_gene
GC content 0.42
exon number 5
gene id G27023
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 35595430 ~ 35603175 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGAAGGGCAGCCCGTGTCGGGAGAACAACACAGCGAGCAGGAGCGGGAGGAGGACGGACGCAGCAGACGAGCTCACACCCACAGCACAAAATGGCAGGGCAGCGAAGATCTGGCAGGGACAAAAAAATCGAGAAAAAGAGTAGGAGCAGCGCGGAAATAATCGCCACAGAGCacagggaggagaaggagaaaataTTTCAGCCGAGTTAGGgtTGAACTTGGACAAACTGGAGATGGATGAATAGAAGAGAAAGTGcttagcatttattttgaagatgtttGCACAGTTGAGAGGTCGTCCTCCGAGGGAGTGCAGttaacaaaagagaaaaaGACTCAGAATTGGACATCTCTGAAGTATTACCCTACCAAGATGCTTCTGAAAACCAGTGATTTTCAAGACACCCTGACCCCATACTGAAGAGGTTCAAGTGGAGACAACTGGTATGTCATCAAGATGGCGCCTCCTTTCTGTGAATTGGGATTACTGTGTCAATTGGGAAGGCTGATTTATtgagttaaaatggacttgaTCTGCATTGCTTGGActtgactgtttttgttttaagaaattgaCTATGTAATTGGaaacccattttaaaatgcatttgattttgtatatcttgaaaaatgtgttttcctggaATAAAAACCTTGCATGGCCAATTGTTTGACCCCcgaatttaaaaaacatacaaaacaaactgtaattttaattgtcgGATATTTGGACTGCTTTAAATTGTTCAATAAAATTTTCCTtcaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33808 lncRNA downstream 42923 35550871 ~ 35552507 (-) True G26997
TU33806 lncRNA downstream 57794 35537304 ~ 35537636 (-) True G26995
TU33805 lncRNA downstream 63992 35530930 ~ 35531438 (-) True G26994
TU33762 lncRNA downstream 778510 34816694 ~ 34816920 (-) True G26952
TU33753 lncRNA downstream 798577 34796169 ~ 34796853 (-) True G26943
TU33928 lncRNA upstream 400018 36003193 ~ 36005750 (-) False AMCG00007883
TU33930 lncRNA upstream 406301 36009476 ~ 36010995 (-) False AMCG00007883
TU33939 lncRNA upstream 423548 36026723 ~ 36026983 (-) True G27107
TU33941 lncRNA upstream 426294 36029469 ~ 36030312 (-) True G27109
TU33962 lncRNA upstream 499131 36102306 ~ 36149276 (-) True G27123
AMCG00007874 mRNA downstream 1293 35556250 ~ 35594137 (-) True AMCG00007874
AMCG00007869 mRNA downstream 790552 34796895 ~ 34804878 (-) True AMCG00007869
AMCG00007861 mRNA downstream 1552534 34011110 ~ 34042896 (-) True AMCG00007861
AMCG00007862 mRNA downstream 1595692 33995712 ~ 33999738 (-) True AMCG00007862
AMCG00007859 mRNA downstream 1657350 33922475 ~ 33938080 (-) True AMCG00007859
AMCG00007875 mRNA upstream 22635 35625810 ~ 35637920 (-) True AMCG00007875
AMCG00007876 mRNA upstream 46669 35649844 ~ 35665471 (-) True AMCG00007876
AMCG00007877 mRNA upstream 114849 35718024 ~ 35735817 (-) True AMCG00007877
AMCG00007880 mRNA upstream 236978 35840153 ~ 35852765 (-) True AMCG00007880
AMCG00007879 mRNA upstream 252713 35855888 ~ 35859285 (-) True AMCG00007879
TU33771 other downstream 725623 34869435 ~ 34869807 (-) True G26961
TU31949 other downstream 9963838 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 10330479 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 11327509 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 11622765 23971671 ~ 23972665 (-) True G25026
TU34246 other upstream 1636914 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 1891736 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 1964442 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 1967782 37570957 ~ 37571488 (-) True G27439
TU34329 other upstream 1969859 37573034 ~ 37588525 (-) True G27442

Expression Profile