RNA id: TU33907


Basic Information

Item Value
RNA id TU33907
length 216
lncRNA type intronic
GC content 0.42
exon number 1
gene id G27079
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 35903044 ~ 35903259 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tccaatcttgtaatcagtcattcagcctatttaaatggaggaaagtagtcactgtgccgtttggtatcattgtgtgcaccacactgaacatggaccagagaaagcaaaggagagagttgtctgaggagatcagaaagaaaataatagacaagcatggtaaaggtaaaggctacaagaccatctccaagcagcttgatgttcctgtgacaacagatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33874 lncRNA upstream 60202 35807368 ~ 35842842 (+) True G27052
TU33840 lncRNA upstream 294407 35608423 ~ 35608637 (+) True G27025
TU33836 lncRNA upstream 299862 35595413 ~ 35603182 (+) True G27021
TU33809 lncRNA upstream 343485 35556145 ~ 35559559 (+) True G26998
TU33804 lncRNA upstream 350541 35550842 ~ 35552503 (+) True G26993
TU33921 lncRNA downstream 84042 35987301 ~ 36000934 (+) True G27089
TU33940 lncRNA downstream 126199 36029458 ~ 36030333 (+) True G27108
TU33944 lncRNA downstream 199037 36102296 ~ 36161392 (+) False G27111
TU33945 lncRNA downstream 199037 36102296 ~ 36182722 (+) True G27111
TU33975 lncRNA downstream 398238 36301497 ~ 36302841 (+) True AMCG00007889
AMCG00007878 mRNA upstream 87977 35811726 ~ 35815067 (+) True AMCG00007878
AMCG00007873 mRNA upstream 282327 35610982 ~ 35620717 (+) True AMCG00007873
AMCG00007872 mRNA upstream 354137 35537561 ~ 35548907 (+) True AMCG00007872
AMCG00007871 mRNA upstream 579154 35320619 ~ 35323890 (+) True AMCG00007871
AMCG00007870 mRNA upstream 674320 35222464 ~ 35228724 (+) True AMCG00007870
AMCG00007884 mRNA downstream 114428 36017687 ~ 36019684 (+) True AMCG00007884
AMCG00007888 mRNA downstream 381724 36284983 ~ 36294189 (+) True AMCG00007888
AMCG00007889 mRNA downstream 392959 36296218 ~ 36302811 (+) False AMCG00007889
AMCG00007892 mRNA downstream 501409 36404668 ~ 36425781 (+) True AMCG00007892
AMCG00007896 mRNA downstream 581727 36484986 ~ 36489446 (+) True AMCG00007896
TU33841 other upstream 282243 35611116 ~ 35620801 (+) False AMCG00007873
TU32939 other upstream 6128009 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 6899271 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 7448337 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 7808303 28083822 ~ 28094741 (+) True G25822
TU34416 other downstream 2241725 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 2265311 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 2452670 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 2528786 38432045 ~ 38436595 (+) True G27551
TU34527 other downstream 2789480 38692739 ~ 38708915 (+) True AMCG00007970

Expression Profile