RNA id: TU33921


Basic Information

Item Value
RNA id TU33921
length 245
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G27089
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 35987301 ~ 36000934 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCAGCAAAGATATTTGTAATTGGAATCAAGGAAATCTACACTGCTCTGCATTTCAAGATTCACTGCAAGGGGAGTATCAGAGGAAGCTGTACAAAGACCTGATGAAAAACTACAATCCACTGGAGAGGCCTGTGTTCAATGACTCCCATGCCCTCACTGTTTACTTCACCCTCAGTCTCATGCAGATAATGGACGTGGATGAAAAGAATCAGGTTTTCACCACCAATGTCTGGTTACAGCTGGT

Function

GO:

id name namespace
GO:0036038 MKS complex cellular_component
GO:0035869 ciliary transition zone cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33907 lncRNA upstream 84042 35903044 ~ 35903259 (+) True G27079
TU33874 lncRNA upstream 144459 35807368 ~ 35842842 (+) True G27052
TU33840 lncRNA upstream 378664 35608423 ~ 35608637 (+) True G27025
TU33836 lncRNA upstream 384119 35595413 ~ 35603182 (+) True G27021
TU33809 lncRNA upstream 427742 35556145 ~ 35559559 (+) True G26998
TU33940 lncRNA downstream 28524 36029458 ~ 36030333 (+) True G27108
TU33944 lncRNA downstream 101362 36102296 ~ 36161392 (+) False G27111
TU33945 lncRNA downstream 101362 36102296 ~ 36182722 (+) True G27111
TU33975 lncRNA downstream 300563 36301497 ~ 36302841 (+) True AMCG00007889
TU33980 lncRNA downstream 305040 36305974 ~ 36306877 (+) True G27139
AMCG00007881 mRNA upstream 55813 35860631 ~ 35931488 (+) True AMCG00007881
AMCG00007878 mRNA upstream 172234 35811726 ~ 35815067 (+) True AMCG00007878
AMCG00007873 mRNA upstream 366584 35610982 ~ 35620717 (+) True AMCG00007873
AMCG00007872 mRNA upstream 438394 35537561 ~ 35548907 (+) True AMCG00007872
AMCG00007871 mRNA upstream 663411 35320619 ~ 35323890 (+) True AMCG00007871
AMCG00007884 mRNA downstream 16753 36017687 ~ 36019684 (+) True AMCG00007884
AMCG00007888 mRNA downstream 284049 36284983 ~ 36294189 (+) True AMCG00007888
AMCG00007889 mRNA downstream 295284 36296218 ~ 36302811 (+) False AMCG00007889
AMCG00007892 mRNA downstream 403734 36404668 ~ 36425781 (+) True AMCG00007892
AMCG00007896 mRNA downstream 484052 36484986 ~ 36489446 (+) True AMCG00007896
TU33841 other upstream 366500 35611116 ~ 35620801 (+) False AMCG00007873
TU32939 other upstream 6212266 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 6983528 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 7532594 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 7892560 28083822 ~ 28094741 (+) True G25822
TU34416 other downstream 2144050 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 2167636 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 2354995 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 2431111 38432045 ~ 38436595 (+) True G27551
TU34527 other downstream 2691805 38692739 ~ 38708915 (+) True AMCG00007970

Expression Profile