RNA id: TU33944



Basic Information


Item Value
RNA id TU33944
length 243
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G27111
representative False

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 36102296 ~ 36182722 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AACTGAgtagattgtgaaatactcagaccggcccgtctggcaccaacaaccatgccacgctcaaaattgcttaaatcacctttctttcccattcagacattcagtttggagttcaggagattgtcttgaccaggaccacacccctaaatgcattgaagcaactgccatgtgattggttggttagataattgcattaatgagaaattgaacaggtgttcctaataatcctttagaaacaagtcC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU33940 lncRNA upstream 71963 36029458 ~ 36030333 (+) True G27108
TU33921 lncRNA upstream 101362 35987301 ~ 36000934 (+) True G27089
TU33907 lncRNA upstream 199037 35903044 ~ 35903259 (+) True G27079
TU33874 lncRNA upstream 259454 35807368 ~ 35842842 (+) True G27052
TU33840 lncRNA upstream 493659 35608423 ~ 35608637 (+) True G27025
TU33975 lncRNA downstream 140105 36301497 ~ 36302841 (+) True AMCG00007889
TU33980 lncRNA downstream 144582 36305974 ~ 36306877 (+) True G27139
TU33999 lncRNA downstream 168028 36329420 ~ 36390820 (+) True G27154
TU34035 lncRNA downstream 268014 36429406 ~ 36429931 (+) True G27187
TU34069 lncRNA downstream 523918 36685310 ~ 36727117 (+) True G27216
AMCG00007884 mRNA upstream 82612 36017687 ~ 36019684 (+) True AMCG00007884
AMCG00007881 mRNA upstream 170808 35860631 ~ 35931488 (+) True AMCG00007881
AMCG00007878 mRNA upstream 287229 35811726 ~ 35815067 (+) True AMCG00007878
AMCG00007873 mRNA upstream 481579 35610982 ~ 35620717 (+) True AMCG00007873
AMCG00007872 mRNA upstream 553389 35537561 ~ 35548907 (+) True AMCG00007872
AMCG00007888 mRNA downstream 123591 36284983 ~ 36294189 (+) True AMCG00007888
AMCG00007889 mRNA downstream 134826 36296218 ~ 36302811 (+) False AMCG00007889
AMCG00007892 mRNA downstream 243276 36404668 ~ 36425781 (+) True AMCG00007892
AMCG00007896 mRNA downstream 323594 36484986 ~ 36489446 (+) True AMCG00007896
AMCG00007895 mRNA downstream 365973 36527365 ~ 36534128 (+) True AMCG00007895
TU33841 other upstream 481495 35611116 ~ 35620801 (+) False AMCG00007873
TU32939 other upstream 6327261 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 7098523 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 7647589 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 8007555 28083822 ~ 28094741 (+) True G25822
TU34416 other downstream 1983592 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 2007178 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 2194537 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 2270653 38432045 ~ 38436595 (+) True G27551
TU34527 other downstream 2531347 38692739 ~ 38708915 (+) True AMCG00007970

Expression Profile