RNA id: TU33980



Basic Information


Item Value
RNA id TU33980
length 720
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G27139
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 36305974 ~ 36306877 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


gctgcttGTGCTTTTTAACCTTGGCTATTTCAATCAACTAAGATTACAACAGTCCCCATGCAGTGcaatcttaaattaattaactttttgaTGATTGTTGATGGTTTTGTAATATGCTTGTGGATCTTTACATTTCATGAACACAGTCTCGAtgtatctgtatttaattttgagACCCCCAGGGATGCCCAGCACTAGTGCCACCCACTCGGCCAATGTCCTGTGCTGCCCTTTCTGGATGGCAGTCATGTGGTGCTGGATGTTGAGGTGCGGCTTCAGGGCGATCAGTCGCTCCATGGTCTGCGCGCTGATGGAGCCATTGAGGTGAGCATGGAGCtCTAGTGgcacttttctctctccctcttcccagCCGTCTGCACATGGGAGGACGCGCTGAATCCAGTGGTTTTCCCGATATATCATCCCAAACAACTGGTTATTGTAGCTTTATGATCATGAGAGAGAAACACTGACACCTCTCTGTTTGCATCCTGCATGTGTGTCTTGGTTGTCTGTTGCGGCTTCGCGCTAATGCCGACTTATTTCCACTACGACGTGCGCGGGTCGATGTTTACCACTTTTGGGAGCTGTCGGTAAAACGGACGGACTTCCTCCTGCATGTCGCCCCTGTAAGCCGGTTCTGCTGTAGACGGATCAGTGCGCATCGTATCAGCGCCCGTGTGTCGCCGTCAAATCACCCCGTCCGTCCTTAACTCTCGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU33975 lncRNA upstream 3133 36301497 ~ 36302841 (+) True AMCG00007889
TU33945 lncRNA upstream 123252 36102296 ~ 36182722 (+) True G27111
TU33944 lncRNA upstream 144582 36102296 ~ 36161392 (+) False G27111
TU33940 lncRNA upstream 275641 36029458 ~ 36030333 (+) True G27108
TU33921 lncRNA upstream 305040 35987301 ~ 36000934 (+) True G27089
TU33999 lncRNA downstream 22543 36329420 ~ 36390820 (+) True G27154
TU34035 lncRNA downstream 122529 36429406 ~ 36429931 (+) True G27187
TU34069 lncRNA downstream 378433 36685310 ~ 36727117 (+) True G27216
TU34107 lncRNA downstream 460776 36767653 ~ 36767939 (+) True G27253
TU34125 lncRNA downstream 537104 36843981 ~ 36845524 (+) True G27263
AMCG00007889 mRNA upstream 3163 36296218 ~ 36302811 (+) False AMCG00007889
AMCG00007888 mRNA upstream 11785 36284983 ~ 36294189 (+) True AMCG00007888
AMCG00007884 mRNA upstream 286290 36017687 ~ 36019684 (+) True AMCG00007884
AMCG00007881 mRNA upstream 374486 35860631 ~ 35931488 (+) True AMCG00007881
AMCG00007878 mRNA upstream 490907 35811726 ~ 35815067 (+) True AMCG00007878
AMCG00007892 mRNA downstream 97791 36404668 ~ 36425781 (+) True AMCG00007892
AMCG00007896 mRNA downstream 178109 36484986 ~ 36489446 (+) True AMCG00007896
AMCG00007895 mRNA downstream 220488 36527365 ~ 36534128 (+) True AMCG00007895
AMCG00007894 mRNA downstream 233706 36540583 ~ 36569423 (+) True AMCG00007894
AMCG00007897 mRNA downstream 316176 36623053 ~ 36644439 (+) True AMCG00007897
TU33841 other upstream 685173 35611116 ~ 35620801 (+) False AMCG00007873
TU32939 other upstream 6530939 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 7302201 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 7851267 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 8211233 28083822 ~ 28094741 (+) True G25822
TU34416 other downstream 1838107 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 1861693 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 2049052 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 2125168 38432045 ~ 38436595 (+) True G27551
TU34527 other downstream 2385862 38692739 ~ 38708915 (+) True AMCG00007970

Expression Profile