RNA id: TU34047


Basic Information

Item Value
RNA id TU34047
length 651
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G27197
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 36491196 ~ 36491846 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAATACccacatcattttaatattttcactatcagcatgtatgtatgtgatcaacttgtaaaaaaaaaatacattttagaacatGATTGTGGCATTAGAGAGGCACCCTCACTGCCTAtgttaaagcaaaaaaaatccatatttttaCACAATGACTGGTTTTGAACACTGCTGCTGATTttacctttttatattttattgtactcTGTATTTTactatttgtatgcattttattctcaatacatttaaaaatattttaaatattccattaattttattttcttgtacagCACTTTAAGCTACTTTTAGTATGAACAgcactatatacacacagttttattattatgaaccgTCTTGAGGAAAAGCTTTCATGCTTTTggccaaatatttatttttatttttgcttgatAATGTGAATTGTGATCAAAACCAGTCACCTTCTaaacaaacaatccaaaaaTCGAACATCCTGCTGCATAATTTCATTTCTAGCTCTGGTACCTTGCATATCAGCTAGCATTGCAGACATTCTGTACCTTATTTATcatgaacatttattatttattagtatgGGCATTagctttcagttttaaacaatCCCTGTCAGAGAATGCATGGGAGATTACACTTGATGGGTCCCAAATCACCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34046 lncRNA downstream 22744 36468086 ~ 36468452 (-) True G27196
TU34020 lncRNA downstream 126741 36362471 ~ 36364455 (-) True G27173
TU33962 lncRNA downstream 341920 36102306 ~ 36149276 (-) True G27123
TU33941 lncRNA downstream 460884 36029469 ~ 36030312 (-) True G27109
TU33939 lncRNA downstream 464213 36026723 ~ 36026983 (-) True G27107
TU34097 lncRNA upstream 252222 36744068 ~ 36745866 (-) True G27243
TU34106 lncRNA upstream 268499 36760345 ~ 36760589 (-) True G27252
TU34108 lncRNA upstream 275807 36767653 ~ 36767939 (-) True G27254
TU34133 lncRNA upstream 351484 36843330 ~ 36843965 (-) False AMCG00007907
TU34168 lncRNA upstream 475281 36967127 ~ 36969756 (-) True G27302
AMCG00007893 mRNA downstream 25761 36431147 ~ 36465435 (-) True AMCG00007893
AMCG00007890 mRNA downstream 177053 36307564 ~ 36314143 (-) True AMCG00007890
AMCG00007891 mRNA downstream 184824 36304406 ~ 36306372 (-) True AMCG00007891
AMCG00007887 mRNA downstream 223390 36179909 ~ 36267806 (-) True AMCG00007887
AMCG00007885 mRNA downstream 348553 36122270 ~ 36142643 (-) True AMCG00007885
AMCG00007901 mRNA upstream 238475 36730321 ~ 36743469 (-) True AMCG00007901
AMCG00007907 mRNA upstream 350629 36842475 ~ 36846583 (-) True AMCG00007907
AMCG00007908 mRNA upstream 378285 36870131 ~ 36879680 (-) True AMCG00007908
AMCG00007911 mRNA upstream 393534 36885380 ~ 36900670 (-) True AMCG00007911
AMCG00007910 mRNA upstream 444981 36936827 ~ 36941868 (-) True AMCG00007910
TU33771 other downstream 1621389 34869435 ~ 34869807 (-) True G26961
TU31949 other downstream 10859604 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 11226245 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 12223275 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 12518531 23971671 ~ 23972665 (-) True G25026
TU34246 other upstream 748243 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 1003065 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 1075771 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 1079111 37570957 ~ 37571488 (-) True G27439
TU34329 other upstream 1081188 37573034 ~ 37588525 (-) True G27442

Expression Profile