RNA id: TU34069


Basic Information

Item Value
RNA id TU34069
length 1616
lncRNA type read_through
GC content 0.42
exon number 2
gene id G27216
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 36685310 ~ 36727117 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgtatatatatatatataaagagtccttCACTGTGCCAATCCCCTCAAAAAACATACAGCACTCCATCAACTGCACAAGCCACATGGATGGCAACACCCCTAAACCACCTTCTCTCAGACCAGGAGATTTATCCCTTCCGGTTGAAAGAGTGGTGCTGCGGTTGTGGTGTAGCcagcgtctgtgtgtgttgctgtaaGGCACTGAGCTTCCATGGCCTTTAGTTACTGTATTTGAAAAGCCAACTAGCTGCCAATATTATGGAGCTATATTGGAGAGTGTGCTTTCTATGACTGTGCCCCAGACAGATCTGTAGTCCTGTACAGTTTAGGCAAAGGAGACCAACGAATGTACATGTTGTTTCAGTTAAAAAGGCTTCTATCCCCATATTCACTACAGCCAGAGAGCAGGAGCCTGACGGTGATTGAAGCAGtcaaacattatatttaacaaataagGTCTTTGTAAATGACCAgcttccaaaataaattaacagagtaaacatttacacacaaatgtacaaaacCTCAGCTGATAACAGGTTATGAATCGGTTGACAGCTTTCAGGCACTTCGTCTAGGCCAActtttgatgtaaaaaaataaacaccaaagCTACTGTGACCACCAAAACAGGCAACATGTAAAGCAACATAGCATGAACACAAATTACCAAGCCTGCGCTGTGAAACTTCAAACTGTTCCCTTTCTGCCTTTTAAAATCTCACGTTTCCTCAAGCAGAGATGTTTTGAGCTGCAGTGTAGCACAACATCTGGAAAACTGCACATGTGAACATTTCATGCAACAGAAATCCAGATGATGCTGAATGCAGAAACTATTTAAGACTGGACTGTGGCTTAAGGGAAGATACAGTCCCTGGTGAAACTCTTGGGGAGAAAAAAACCCAAGAGAGGAAATGAATGAGATGTTTTAGAGTGAATGCTTCAGTTTAAAACTGTGCAAACATGGAACATCAAACCCGGCTGAGCGGTAATCTTTAAAAAATTTCAGGAGGAAATCTCGCCCAATTGTCCATATATTATAGTGAAAATGTGCAGTGAACTGTTaccatttaataacatttattgacaagaaataaatacgAAAAGTGCAACTGCAAATGGTTTGATTGTAATGCAGCGATTGAAGGCAGAAGAAATTTGTTCAGGcacacagtaaaaaaaacagaaaaaacatgaaaaggtgATAAAAGCTCACGGGTCTTCATAAGGAGAAGTAACAcccaaaaagagagagagagagagaaaggattAATTCTTCTTGTTTTGGGCTCCACTTAAGTGGATCTTTCTTACAGTGTTGGAGGGTCAGAGAGGATGTAATGACCGATAGCTTTTTCAATCAAAGTCCAAATTAACAGAGTTTTCAAGTGTGAGGAAAAGGCTGATTCCTGAGCAAGCTGGGTGAATTCACAGTCACTGGTTCCAGTTGGGCTGTGGAGCCGATGGTACTTGGCAATGCCATACAGCCTGACAACAGAAGTACCGGGGCAGGAGAGTGTTGAGGGGAGGAGGCCCGGGCTGTGGTCCTGTGGGCGTGGTAGGCCTTAACCTCAGCCTGGAATCAGACCATCAGCGGAGGTCACTGCACACAGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34035 lncRNA upstream 255379 36429406 ~ 36429931 (+) True G27187
TU33999 lncRNA upstream 294490 36329420 ~ 36390820 (+) True G27154
TU33980 lncRNA upstream 378433 36305974 ~ 36306877 (+) True G27139
TU33975 lncRNA upstream 382469 36301497 ~ 36302841 (+) True AMCG00007889
TU33945 lncRNA upstream 502588 36102296 ~ 36182722 (+) True G27111
TU34107 lncRNA downstream 40536 36767653 ~ 36767939 (+) True G27253
TU34125 lncRNA downstream 116864 36843981 ~ 36845524 (+) True G27263
TU34164 lncRNA downstream 229065 36956182 ~ 36956454 (+) True G27300
TU34204 lncRNA downstream 365532 37092649 ~ 37093330 (+) True G27334
TU34216 lncRNA downstream 476753 37203870 ~ 37205956 (+) False AMCG00007923
AMCG00007898 mRNA upstream 38801 36644909 ~ 36646509 (+) True AMCG00007898
AMCG00007897 mRNA upstream 40871 36623053 ~ 36644439 (+) True AMCG00007897
AMCG00007894 mRNA upstream 115887 36540583 ~ 36569423 (+) True AMCG00007894
AMCG00007895 mRNA upstream 151182 36527365 ~ 36534128 (+) True AMCG00007895
AMCG00007896 mRNA upstream 195864 36484986 ~ 36489446 (+) True AMCG00007896
AMCG00007900 mRNA downstream 16867 36743984 ~ 36755828 (+) True AMCG00007900
AMCG00007905 mRNA downstream 44495 36771612 ~ 36791738 (+) True AMCG00007905
AMCG00007903 mRNA downstream 88533 36815650 ~ 36841835 (+) True AMCG00007903
AMCG00007906 mRNA downstream 120437 36847554 ~ 36855323 (+) True AMCG00007906
AMCG00007904 mRNA downstream 128511 36855628 ~ 36865482 (+) True AMCG00007904
TU33841 other upstream 1064509 35611116 ~ 35620801 (+) False AMCG00007873
TU32939 other upstream 6910275 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 7681537 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 8230603 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 8590569 28083822 ~ 28094741 (+) True G25822
TU34416 other downstream 1417867 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 1441453 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 1628812 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 1704928 38432045 ~ 38436595 (+) True G27551
TU34527 other downstream 1965622 38692739 ~ 38708915 (+) True AMCG00007970

Expression Profile