RNA id: TU34125


Basic Information

Item Value
RNA id TU34125
length 1544
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G27263
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 36843981 ~ 36845524 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGGTGCTGAGGCATGCTGGACTGAGACAGGCTATCCACCCAGCCCAGGAACAAATATAAAGACACTTAATGTCCCCTtcacaaaactggaaaaaaaacaacatgtaaatAAACCCATCATAAACCACTATCATTGGGAAATTACCAccttttttattactgttgcttatgcatttttaattcagcACTGCATTGTTCTTCTTACGGCCtttgttataaataaagaaGTCTTACCTCATTCATGATAAAAGAAAGTTCCAACATTTATAAgacaagttatttttctttttgaattgtTAACCACATTGACTGGAGCAAggtattgctttattttattattttctttaataattcCACACTGTATCTAAGAATATCTCACCGTGttgtatttcaaacaaatttgtcaataaaaaaggaacatgAAGAGTGTTGATATTATCATCTGTTATGTAGTACCTAATGCACACATGTTCTTGTGTTATTCAAAAACCAACACTAATGTTGAAATAGGTTACTTTTGGATcatgtatggatgatgttttgaatagaacaaaatgcaaacatgaCACTAACATGCTAAGGTAAATGCAAATTCTGAAATCAGGGATCTGAATGTGGATTTGAGAGCATGACATCCCTTCACTGAAATGTACCACTGCTTAATTAACTAAAAATCCcaacaaatatattgaatttattAGGGAATGTGTTTCTATAAAAATgtcttaaagaaataaacattctCAAGGTATGTGTGCAGGCAAAGCCTTAACTACTAAAGGCAGGGGCTGCACTGAGGGTTATACTAAACCTGCTAGTTGAAGAGAAAGCAGTAGCAAAAGAGATACAGTTATACAGTTAATTTACATGTCAATTTATAATTCTGTATTTGAGCCATTTTGAAACATGAAAGAGCGCACATATATCAAAGCTACAATGTcctttgtacatatttttgctttgtcaaaacctagaaaataaatagcatatttaatttcttatatattttaattaaattgcaattttgttgttgtttttaaatacgatatattacatttgactaattgaaaacaatgaacaattaaATCATCTTAAAAGTCAAACAACTGCTTTCAGGGAAGGGAATCCTGTAATGCAGGAGGAACCTGCACATTGTCCTTGAAGAATATTTTTAAGGGACTAGTAAGGAAGCAAGACCTGTCTAATGAAAACTACTGATCATAATGTCAGTTGCTGCATTGCTTGAATTTGAATCCCTTGAAGGTGGCCTCGGCATGCTGTTCATTTAGAGACAGGCTGTCTTGTTCAGTACCAGTTTGTGCAGGTGATCATAAAGCACATGTCGTCCACTCTCTTACTACCCATGCGGCACTGAGGCAGCTCTGTCCTCTGCCCCTGAGGGGTCTCTGCTGTCGGCCCCCGAGCGGTCTCTGCCACGACGGTGTTTGAGGGGGGCTCTGTGAGGACTGCGGAGGCCTGTGGTGTCACTGTGATGTCCTCTGGCGCTGCACTCCTCTCACAGCTCTGGCCTCCCCCCATTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34107 lncRNA upstream 76042 36767653 ~ 36767939 (+) True G27253
TU34069 lncRNA upstream 116864 36685310 ~ 36727117 (+) True G27216
TU34035 lncRNA upstream 414050 36429406 ~ 36429931 (+) True G27187
TU33999 lncRNA upstream 453161 36329420 ~ 36390820 (+) True G27154
TU33980 lncRNA upstream 537104 36305974 ~ 36306877 (+) True G27139
TU34164 lncRNA downstream 110658 36956182 ~ 36956454 (+) True G27300
TU34204 lncRNA downstream 247125 37092649 ~ 37093330 (+) True G27334
TU34216 lncRNA downstream 358346 37203870 ~ 37205956 (+) False AMCG00007923
TU34287 lncRNA downstream 649635 37495159 ~ 37499385 (+) True G27400
TU34351 lncRNA downstream 931541 37777065 ~ 37777462 (+) True G27462
AMCG00007903 mRNA upstream 2146 36815650 ~ 36841835 (+) True AMCG00007903
AMCG00007905 mRNA upstream 52243 36771612 ~ 36791738 (+) True AMCG00007905
AMCG00007900 mRNA upstream 88153 36743984 ~ 36755828 (+) True AMCG00007900
AMCG00007902 mRNA upstream 125466 36717754 ~ 36718515 (+) True AMCG00007902
AMCG00007899 mRNA upstream 132594 36700805 ~ 36711387 (+) True AMCG00007899
AMCG00007906 mRNA downstream 2030 36847554 ~ 36855323 (+) True AMCG00007906
AMCG00007904 mRNA downstream 10104 36855628 ~ 36865482 (+) True AMCG00007904
AMCG00007912 mRNA downstream 83529 36929053 ~ 36939598 (+) True AMCG00007912
AMCG00007909 mRNA downstream 111135 36956659 ~ 36969735 (+) True AMCG00007909
AMCG00007914 mRNA downstream 177888 37023412 ~ 37034789 (+) True AMCG00007914
TU33841 other upstream 1223180 35611116 ~ 35620801 (+) False AMCG00007873
TU32939 other upstream 7068946 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 7840208 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 8389274 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 8749240 28083822 ~ 28094741 (+) True G25822
TU34416 other downstream 1299460 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 1323046 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 1510405 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 1586521 38432045 ~ 38436595 (+) True G27551
TU34527 other downstream 1847215 38692739 ~ 38708915 (+) True AMCG00007970

Expression Profile