RNA id: TU34287


Basic Information

Item Value
RNA id TU34287
length 3655
lncRNA type read_through
GC content 0.45
exon number 2
gene id G27400
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 37495159 ~ 37499385 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCGGGGTCCTGCGAGAGAAGCAGCTACGCAGGAGAGTGGCGGCGATGGAGGCGGACGCGCTGCGCGGAGAGGAGTGATCCAGGGCCGgactgACTTGATGCGAGCGAAGCCAAAGCACTGCCATCCCAGTCCGGCGCCGCGGCGGCTGCGCGGATCTCCcttctgggtgtgtgtgtgagacggACAGACTTGCAAACATCCGCCACGATGTACTGCCTACAGTGGCTGCTGCCAGTGCTCCTCATCCCCAAGCCCCTGAACCCGGCCCTGTGGTTCAACCACTCCATGTTCATGGGCTTCTACCTGCTCAGCTTTCTTCTGGAAAGGAAGCCCTGTACCATCTGTGCCTTGGTCTTCCTGGCAGCGCTGTTTCTCATCTGCTACAGCTGCTGGGGCAACTGCTTCTTGTACCACTGCGGCGACTCCCCCCTGCCCGAGTCGGCCCATGACCCCAGCATCGTGGCCTCCTAGGCGGGCTGGTCTGCATGGGTCGGTGGACTGTGGACAACgtgcccccttcccccccatCCTCTGCCTCCGCCACCACCCCTGAGGACCCAAGTTATTTCTAAATCCTTGGAAACTGGACAATCTGTATCTGTCACTCATGCTGTGAATATagaatctgtttattttttattttatgattttcttgCTGTAAACTCTTTGTTGAGGACTAATTCTCACCTGCAGGGCGGAAGGCACTTGGGCTGGCTTTGTTTTGTCTAGTCTTACTCTCCTCTCATTCTCTTCCTTGTGccaggtttttttattttctttgttggtCTCCCAGGATCTGTCTCTCCATTTTGCATGGACTGTTTGCCCAGCTATTTCTTCATCGTCAGTGGctgtttatgcattttgtttgatttacatTAGAGAAATCATTACCggttatttttttggttttgtttgttttgtcctcCCAGATTTGTAGGAGGGGAAAGTGCAAagcctgtgtgtttctgttaaaaagcaaaagaaaaatcagcGCAATGAGGACAATGTGCTGCAGAGAAACGCTTGAGTTTTCCCTCATGACTGGACGTGTCGGCGTGGGCTTCTGTGGATATTGATCACCAAGAAGTTGATCTTGCTTACAATCATGAGTTGGCAAAGTTTGGGGTTGGGGGGACGGCATAATTCTCTGTGGAGTCGGTGTGATCTCGTATATCATGGAAAAGTGTAAATCccattcattgtgtgtgtggttacatttaataaagtttatttaaaaaaataataataaatgaaaggaaTTATCTTCCAAGTAAAACCTGAAATGGCGGGCGCAGTTAGTTTCTGTCCTTTCCCTGATTGCCACAAGCTGCCGTGTAAATGACAGATGGATTTATTAACCTGGTCGGGTGGGATAGGAGCCGGTGAAGGGTGACTGCAGCTGTACTTGAATTAACTAGAAGCAGAAGAGCAGGTCTGGGCCGTGATGATTGAGGTGAAGTGCACGAGTGCTTTAAAAGAGAGCCGTTGTGCTGTCTGACCGGGATTAAGACTGTGGGGATGGTATTAAAATGCCTATAGTCTTTTGTCATTCAAGTATATTAGAGtaactttttttgttaatgtcaTGAATATGGTGGCTAAACTATACATGTAATTAAGTGTATTGCGCCAGGGGGAAGGATTCCTCTGGCATGGATCGCACCAGTTTTCCAAAAGTGACTCATGAGGCGTGGTGGCGAAGTTGCTCACACAGCAGGTTTATAAGACTGGGCTTCTCTCAGAAGTGCAGCGTGAGGCCACCAAAGCAGACGGCAAAGATGTGGAAGGAGATCATAGATGAACAAAAGTCCCTGTTTTTGTCACAGACTGTCCACTGAGTTGTGATTGCACTGCATCCAGACATCTCCGCAGAGTAATGTCACTTTTAATTTGAtgagttttttgggggggagggtagggtggataaagaaacaaaataactgatGCAAAGcgtgtttgtattttcttaaattgttgCAATAGCTGAAGAGCTGTTTGCCATTAAAACATACAAGTATTCGTCTTGGTGTGATATTCTAGGAAAcccatgtttttgtatttgacaGTTCTGTCTTGTGTCGTCTGACTTccttgttctgtttgtttgttttggttttgttggaTTTTAATTCACATGTGACAGCATTTACTGGGTCTGTAAATCTTTCTTGCAGTATAGAAATTCAGTAGATTTTGCAAACATTTGCAGTATTTGTAAAGAATGCAGTTTTTGTCAGTCTGAGTGGTACAGCTGGGTTGTTTACAAGGCCCACGTTGCTGTGATTCGCAAGGCAGTGATGACGAGTggcttgaaaaaataaagtgaagtaGGTGCACATTATGTATAATATGAATGTGAAACCTCATGCTATGTTTAACTCAATGCTCGGTTGGGTTTCTATTTTTAGGCattcagaaaagaaaattagatCATTGCCTTTTTGTATGCTGTTGCCAGTCCCTTTGGTATTTGCAGTTCTTCAGGGCTTGCATTCCTCATCTCTGATGCATTGTGGGTTCATGACAGGCGGTCGGGATGGTGCTCCATCAATAACTGGTGAAATTGTCTGTTTGCTTCAGTGCAAGCTGCATCCCTAGATCGTATGACCTAGATCCTGCTATTTTCACTCTGTCGGAGGTGTTAAAGAGTAACTGGAGCTCCTGCTAGATCGTGGAAGGAATTCTTGCAGCCGTAAAATTAGCAACCTCTGCTACAGGCATCTGCTGGACCTGGCTGTGTGGGAGTGCTGGGAGCTGTACTGCTGGGCTGTTGGGCAGTGTTGCAGTAGCCTGCTGGTGTCTTTCACTTGTAGTTGCTTAGTGGGTGAATAAATCTGTCATATCTGTTTAATTTCagatctaaaaacaaacaaaaaactgcaagATTTGCACAATTCCTGTCATGCATAATACGTTTAAATGGTTTTAGTTACttgtaaataattgtttttgttgttgttgatatacACTAGACGAGCCTATAATTTCTGCTACTTATTATCCACATTGGATGTAAGACTTTGGGGAATTCTGTGGCGTTTCACTTGACTGAGACGCCCAACAATGTGGCTCCTCTCTTCCATTGTGGTCGTGTACACCtgacagggtggggggggttgggtaCAGTGTTGCTTTAGGGGACAATGTGCGTTAGCATTATAGTTAAACTATTTAATAGTCACTTTATAGAATACTATTGCAGTTTTAATACTAGGCACATATCAGACAATGCCAGCTTAGCAGTTTTGACAATGTTGAACTTTATTTGCTTCCACCCCCCCCTCACTTTGTTGCTGCTTTAGATACTTTAAGCAGAAAGATGGTAAAACTACTGCTTTGTTTTACTATGTGTGGATTATCTTTCAATGGCtggagaaagacagagggatatatatatatatctttctctctatatatagaaTGAAAACAACTGCTAGGGTTTACAATGCtgatgtgtgtattttcattctGTCTGGGTCTGGTTTTGCTTCCTCCTCACTGCCGGGCAGTGgtcctgtctgtgtctgtggccGCCGAGAGTCCGTGTCTGCATTTCCCATTTGCACCTTTTGTGATGTACGAGCCTGTTGCATGGTACAGTCTACTCCTCGCcaccaaatgtttttaaaaataagctgATAAAATAAATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34216 lncRNA upstream 289203 37203870 ~ 37205956 (+) False AMCG00007923
TU34204 lncRNA upstream 401829 37092649 ~ 37093330 (+) True G27334
TU34164 lncRNA upstream 538705 36956182 ~ 36956454 (+) True G27300
TU34125 lncRNA upstream 649635 36843981 ~ 36845524 (+) True G27263
TU34107 lncRNA upstream 727220 36767653 ~ 36767939 (+) True G27253
TU34351 lncRNA downstream 277680 37777065 ~ 37777462 (+) True G27462
TU34384 lncRNA downstream 517483 38016868 ~ 38017144 (+) True G27489
TU34393 lncRNA downstream 527995 38027380 ~ 38027923 (+) True G27497
TU34464 lncRNA downstream 940189 38439574 ~ 38439892 (+) True G27552
TU34465 lncRNA downstream 942151 38441536 ~ 38442071 (+) True G27553
AMCG00007934 mRNA upstream 13988 37469923 ~ 37481171 (+) True AMCG00007934
AMCG00007931 mRNA upstream 149044 37336571 ~ 37346115 (+) True AMCG00007931
AMCG00007924 mRNA upstream 248352 37244267 ~ 37246807 (+) True AMCG00007924
AMCG00007923 mRNA upstream 278601 37204747 ~ 37216558 (+) True AMCG00007923
AMCG00007925 mRNA upstream 295335 37191982 ~ 37199824 (+) True AMCG00007925
AMCG00007937 mRNA downstream 54608 37553993 ~ 37574386 (+) True AMCG00007937
AMCG00007942 mRNA downstream 79683 37579068 ~ 37590574 (+) True AMCG00007942
AMCG00007949 mRNA downstream 503565 38002950 ~ 38010795 (+) True AMCG00007949
AMCG00007950 mRNA downstream 511791 38011176 ~ 38014794 (+) True AMCG00007950
AMCG00007947 mRNA downstream 519507 38018892 ~ 38026850 (+) True AMCG00007947
TU33841 other upstream 1874358 35611116 ~ 35620801 (+) False AMCG00007873
TU32939 other upstream 7720124 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 8491386 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 9040452 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 9400418 28083822 ~ 28094741 (+) True G25822
TU34416 other downstream 645599 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 669185 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 856544 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 932660 38432045 ~ 38436595 (+) True G27551
TU34527 other downstream 1193354 38692739 ~ 38708915 (+) True AMCG00007970

Expression Profile