RNA id: TU34303


Basic Information

Item Value
RNA id TU34303
length 4069
RNA type TUCP
GC content 0.45
exon number 2
gene id G27416
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 37494911 ~ 37499392 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTAAACCCATTTATTTTATcagcttatttttaaaaacatttggtgGCGAGGAGTAGACTGTACCATGCAACAGGCTCGTACATCACAAAAGGTGCAAATGGGAAATGCAGACACGGACTCTCGGCggccacagacacagacaggacCACTGCCCGGCAGTGAGGAGGAAGCAAAACCAGACCCAGACagaatgaaaatacacacatcaGCATTGTAAACCCTAGCAGTTGTTTTCAttctatatatagagagaaagatatatatatatatccctctgtctttctccaGCCATTGAAAGATAATCCACACATAGTAAAACAAAGCAGTAGTTTTACCATCTTTCTGCTTAAAGTATCTAAAGCAGCAACAAAGTGAGGGGGGGGTGGAAGCAAATAAAGTTCAACATTGTCAAAACTGCTAAGCTGGCATTGTCTGATATGTGCCTAGTATTAAAACTGCAATAGTATTCTATAAAGTGACTATTAAATAGTTTAACTATAATGCTAACGCACATTGTCCCCTAAAGCAACACTGtacccaaccccccccaccctgtcaGGTGTACACGACCACAATGGAAGAGAGGAGCCACATTGTTGGGCGTCTCAGTCAAGTGAAACGCCACAGAATTCCCCAAAGTCTTACATCCAATGTGGATAATAAGTAGCAGAAATTATAGGCTCGTCTAGTgtatatcaacaacaacaaaaacaattatttacaaGTAACTAAAACCATTTAAACGTATTATGCATGACAGGAATTGTGCAAATcttgcagttttttgtttgtttttagatctGAAATTAAACAGATATGACAGATTTATTCACCCACTAAGCAACTACAAGTGAAAGACACCAGCAGGCTACTGCAACACTGCCCAACAGCCCAGCAGTACAGCTCCCAGCACTCCCACACAGCCAGGTCCAGCAGATGCCTGTAGCAGAGGTTGCTAATTTTACGGCTGCAAGAATTCCTTCCACGATCTAGCAGGAGCTCCAGTTACTCTTTAACACCTCCGACAGAGTGAAAATAGCAGGATCTAGGTCATACGATCTAGGGATGCAGCTTGCACTGAAGCAAACAGACAATTTCACCAGTTATTGATGGAGCACCATCCCGACCGCCTGTCATGAACCCACAATGCATCAGAGATGAGGAATGCAAGCCCTGAAGAACTGCAAATACCAAAGGGACTGGCAACAGCATACAAAAAGGCAATGatctaattttcttttctgaatGCCTAAAAATAGAAACCCAACCGAGCATTGAGTTAAACATAGCATGAGGTTTCACATTCATATTATACATAATGTGCACCtacttcactttattttttcaagccACTCGTCATCACTGCCTTGCGAATCACAGCAACGTGGGCCTTGTAAACAACCCAGCTGTACCACTCAGACTGACAAAAACTGCATTCTTTACAAATACTGCAAATGTTTGCAAAATCTACTGAATTTCTATACTGCAAGAAAGATTTACAGACCCAGTAAATGCTGTCACATGTGAATTAAAAtccaacaaaaccaaaacaaacaaacagaacaaggAAGTCAGACGACACAAGACAGAACtgtcaaatacaaaaacatgggTTTCCTAGAATATCACACCAAGACGAATACTTGTATGTTTTAATGGCAAACAGCTCTTCAGCTATTGcaacaatttaagaaaatacaaacacgCTTTGCatcagttattttgtttctttatccaccctaccctcccccccaaaaaactcaTCAAATTAAAAGTGACATTACTCTGCGGAGATGTCTGGATGCAGTGCAATCACAACTCAGTGGACAGTCTGTGACAAAAACAGGGACTTTTGTTCATCTATGATCTCCTTCCACATCTTTGCCGTCTGCTTTGGTGGCCTCACGCTGCACTTCTGAGAGAAGCCCAGTCTTATAAACCTGCTGTGTGAGCAACTTCGCCACCACGCCTCATGAGTCACTTTTGGAAAACTGGTGCGATCCATGCCAGAGGAATCCTTCCCCCTGGCGCAATACACTTAATTACATGTATAGTTTAGCCACCATATTCAtgacattaacaaaaaaagttaCTCTAATATACTTGAATGACAAAAGACTATAGGCATTTTAATACCATCCCCACAGTCTTAATCCCGGTCAGACAGCACAACGGCTCTCTTTTAAAGCACTCGTGCACTTCACCTCAATCATCACGGCCCAGACCTGCTCTTCTGCTTCTAGTTAATTCAAGTACAGCTGCAGTCACCCTTCACCGGCTCCTATCCCACCCGACCAGGTTAATAAATCCATCTGTCATTTACACGGCAGCTTGTGGCAATCAGGGAAAGGACAGAAACTAACTGCGCCCGCCATTTCAGGTTTTACTTGGAAGATAAttcctttcatttattattatttttttaaataaactttattaaatgtaaccacacacacaatgaatggGATTTACACTTTTCCATGATATACGAGATCACACCGACTCCACAGAGAATTATGCCGTCCCCCCAACCCCAAACTTTGCCAACTCATGATTGTAAGCAAGATCAACTTCTTGGTGATCAATATCCACAGAAGCCCACGCCGACACGTCCAGTCATGAGGGAAAACTCAAGCGTTTCTCTGCAGCACATTGTCCTCATTGCgctgatttttcttttgctttttaacagaaacacacaggctTTGCACTTTCCCCTCCTACAAATCTGGgaggacaaaacaaacaaaaccaaaaaaataaccGGTAATGATTTCTCTAatgtaaatcaaacaaaatgcataaacagCCACTGACGATGAAGAAATAGCTGGGCAAACAGTCCATGCAAAATGGAGAGACAGATCCTGGGAGaccaacaaagaaaataaaaaaacctggCACAAGGAAGAGAATGAGAGGAGAGTAAGACTAGACAAAACAAAGCCAGCCCAAGTGCCTTCCGCCCTGCAGGTGAGAATTAGTCCTCAACAAAGAGTTTACAGcaagaaaatcataaaataaaaaataaacagattctATATTCACAGCATGAGTGACAGATACAGATTGTCCAGTTTCCAAGGATTTAGAAATAACTTGGGTCCTCAGGGGTGGTGGCGGAGGCAGAGGatgggggggaagggggcacGTTGTCCACAGTCCACCGACCCATGCAGACCAGCCCGCCTAGGAGGCCACGATGCTGGGGTCATGGGCCGACTCGGGCAGGGGGGAGTCGCCGCAGTGGTACAAGAAGCAGTTGCCCCAGCAGCTGTAGCAGATGAGAAACAGCGCTGCCAGGAAGACCAAGGCACAGATGGTACAGGGCTTCCTTTCCAGAAGAAAGCTGAGCAGGTAGAAGCCCATGAACATGGAGTGGTTGAACCACAGGGCCGGGTTCAGGGGCTTGGGGATGAGGAGCACTGGCAGCAGCCACTGTAGGCAGTACATCGTGGCGGATGTTTGCAAGTCTGTccgtctcacacacacacccagaagGGAGATCCGCGCAGCCGCCGCGGCGCCGGACTGGGATGGCAGTGCTTTGGCTTCGCTCGCATCAAGTcagtcctATTCTTCCGCTTTCCGGGAGAACCGAGAGGTGGCTCGGGGGTCAATGTGCGGCGCTACAGCCCCTTGAGAGCGGAGGCCAGGCGGTACAGCTGCGGTCTAGCTGTGGTTCACCAGCCGGGCCGCACTGCGTGTCGGCGGCCATCAGAGCAGACCTACCGGCCCTGGATCACTCCTCTCCGCGCAGCGCGTCCGCCTCCATCGCCGCCACTCTCCTGCGTAGCTGCTTCTCTCGCAGGACCCCGGCAgataggggtgggggggaggagggagcTGTCTATCTCACGTCCTGTTTCTTCACCTGCTGTGGTCTGGGCATGGTAGGACCCACATGAATGACTCAGTTTCCTCTgatatgcattttttgtatggaaatatatgaatacagaCACATATAGCATTGAAATGCGTCACTAAGAATAAAAAGCCCTATACTGTCCGTTTGTTTCTTCAGGCATTGCTTGGGCAGCAACGTATTGTAAGCCCCCTAATATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34205 lncRNA downstream 401611 37092649 ~ 37093300 (-) True G27335
TU34168 lncRNA downstream 525155 36967127 ~ 36969756 (-) True G27302
TU34133 lncRNA downstream 650946 36843330 ~ 36843965 (-) False AMCG00007907
TU34108 lncRNA downstream 726972 36767653 ~ 36767939 (-) True G27254
TU34106 lncRNA downstream 734322 36760345 ~ 36760589 (-) True G27252
TU34322 lncRNA upstream 67377 37566769 ~ 37566983 (-) True G27435
TU34323 lncRNA upstream 67811 37567203 ~ 37567566 (-) True G27436
TU34325 lncRNA upstream 70867 37570259 ~ 37570881 (-) True G27438
TU34352 lncRNA upstream 277677 37777069 ~ 37777318 (-) True G27463
TU34386 lncRNA upstream 517838 38017230 ~ 38017469 (-) True G27491
AMCG00007941 mRNA downstream 4078 37487728 ~ 37490833 (-) True AMCG00007941
AMCG00007935 mRNA downstream 56402 37423717 ~ 37438509 (-) True AMCG00007935
AMCG00007936 mRNA downstream 90048 37404441 ~ 37404863 (-) True AMCG00007936
AMCG00007933 mRNA downstream 111316 37369911 ~ 37383595 (-) True AMCG00007933
AMCG00007932 mRNA downstream 141297 37351611 ~ 37353614 (-) True AMCG00007932
AMCG00007939 mRNA upstream 1392 37500784 ~ 37519123 (-) True AMCG00007939
AMCG00007943 mRNA upstream 292049 37791441 ~ 37827192 (-) True AMCG00007943
AMCG00007945 mRNA upstream 367058 37866450 ~ 37876752 (-) True AMCG00007945
AMCG00007946 mRNA upstream 413186 37912578 ~ 37916476 (-) True AMCG00007946
AMCG00007944 mRNA upstream 425879 37925271 ~ 37936478 (-) True AMCG00007944
TU34246 other downstream 251928 37240089 ~ 37242983 (-) False AMCG00007929
TU33771 other downstream 2625104 34869435 ~ 34869807 (-) True G26961
TU31949 other downstream 11863319 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 12229960 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 13226990 24265824 ~ 24267921 (-) False AMCG00007637
TU34324 other upstream 68225 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 71565 37570957 ~ 37571488 (-) True G27439
TU34329 other upstream 73642 37573034 ~ 37588525 (-) True G27442
TU34400 other upstream 586537 38085929 ~ 38091878 (-) True G27502
TU34421 other upstream 661894 38161286 ~ 38164542 (-) True G27522

Expression Profile