RNA id: TU34325


Basic Information

Item Value
RNA id TU34325
length 623
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G27438
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 37570259 ~ 37570881 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGTTTAGTCCCTCTCACTGTCACTGAGCCTTACTGAGTGCTGTCCttcagtttaatattattacttattaatttacCTTAATCCAAGGCAACATGTCCTACACCGTGCAATATAATAAGTGCACTGCACTCTATTTCTAGCATTACACAACTGTATTCACATGGACACAAgagcaaaattaaaaagctaGTATAACCCTAATGCACACTGTAACTAACGCTGCTCAGCGTGGCTGCAGGGAGGGCGGGGCTCTGACCTTGTGCAGGTGGGAGACAGGCGCCCCCATGGTGTAGTTCAGGCTCTGGGCCAAATGCACCCTGGCAGGGACGTAGCCTCCCCTCTGGGGGGTGCTGTTGATCATCGGGGGGGCGGACAGCGAACTGGGCGAGTCGAACTGCTGGCTGGAGGAGGGCCACTTCCCCTTGAGGATGGCATGACAGATGCTGTCGATGCGATTGATGATCACGCGGTCCTACGAGTTTGCAAAGAAACATTACATCACATCTGTACTGTTATcaccattttcattttgcagtagtttattttgttagatTAAGGCAAGCAATCCAGAGTCCACAACAGGGACTGTCTCAGAtaccgaggaggaggaggagaaagagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34323 lncRNA downstream 2693 37567203 ~ 37567566 (-) True G27436
TU34322 lncRNA downstream 3276 37566769 ~ 37566983 (-) True G27435
TU34205 lncRNA downstream 476959 37092649 ~ 37093300 (-) True G27335
TU34168 lncRNA downstream 600503 36967127 ~ 36969756 (-) True G27302
TU34133 lncRNA downstream 726294 36843330 ~ 36843965 (-) False AMCG00007907
TU34352 lncRNA upstream 206188 37777069 ~ 37777318 (-) True G27463
TU34386 lncRNA upstream 446349 38017230 ~ 38017469 (-) True G27491
TU34469 lncRNA upstream 868722 38439603 ~ 38439862 (-) True G27557
TU34553 lncRNA upstream 1139971 38710852 ~ 38712337 (-) True G27626
TU34574 lncRNA upstream 1178246 38749127 ~ 38767568 (-) False G27639
AMCG00007939 mRNA downstream 51136 37500784 ~ 37519123 (-) True AMCG00007939
AMCG00007941 mRNA downstream 79426 37487728 ~ 37490833 (-) True AMCG00007941
AMCG00007935 mRNA downstream 131750 37423717 ~ 37438509 (-) True AMCG00007935
AMCG00007936 mRNA downstream 165396 37404441 ~ 37404863 (-) True AMCG00007936
AMCG00007933 mRNA downstream 186664 37369911 ~ 37383595 (-) True AMCG00007933
AMCG00007943 mRNA upstream 220560 37791441 ~ 37827192 (-) True AMCG00007943
AMCG00007945 mRNA upstream 295569 37866450 ~ 37876752 (-) True AMCG00007945
AMCG00007946 mRNA upstream 341697 37912578 ~ 37916476 (-) True AMCG00007946
AMCG00007944 mRNA upstream 354390 37925271 ~ 37936478 (-) True AMCG00007944
AMCG00007953 mRNA upstream 575638 38146519 ~ 38148924 (-) True AMCG00007953
TU34324 other downstream 975 37567617 ~ 37569284 (-) True G27437
TU34303 other downstream 70867 37494911 ~ 37499392 (-) True G27416
TU34246 other downstream 327276 37240089 ~ 37242983 (-) False AMCG00007929
TU33771 other downstream 2700452 34869435 ~ 34869807 (-) True G26961
TU31949 other downstream 11938667 25630795 ~ 25631592 (-) True AMCG00007684
TU34326 other upstream 76 37570957 ~ 37571488 (-) True G27439
TU34329 other upstream 2153 37573034 ~ 37588525 (-) True G27442
TU34400 other upstream 515048 38085929 ~ 38091878 (-) True G27502
TU34421 other upstream 590405 38161286 ~ 38164542 (-) True G27522
TU34684 other upstream 1476408 39047289 ~ 39049597 (-) False AMCG00007990

Expression Profile