RNA id: TU34400


Basic Information

Item Value
RNA id TU34400
length 5930
RNA type TUCP
GC content 0.49
exon number 2
gene id G27502
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38085929 ~ 38091878 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttgtttttcatgtttttgtattttttaacccacattcctttttaatttaaggcTTCAGCTGCACTACACAAAGACAAAATTTGAACATCTTTTTTTGCAATATACAATGAAGATTTACAGCGAGAGGTCAACTCTCATACAAACTAGGATTGATACAGCAGGTGCCCCGTGACCCCCTCGGGCCTGGCACAATACTGACGAGTCGGGGTTGGGGGGGGAAGGGCGGCTAGGCCAGCCAGAAACcaatgaagaaacaaaaggcGAGCACCACGTGTTTCGATTAATCTCCCCGTTTGGTTTTGAAATACCCACAGTGAATCCGTCCACACCTGGAGGTCTGTAAGACAGGCTGGGGGAGGAGTAGCTGAAATCAATCTGTAGCTTCCGGCAGTCCGTCAGTACTGCTTcagaggttttttttatttgtcagtttTTGCCTGCTGATGGGAGGAGGAAGGTGGCTGGTGTTCAGAACAAGATAATTAGTGGGAGACTAAAGGAAGAACACTGGTGGTCTGTATTCTACACTGGTCTGACAtccaaccccccaaaaaacaaaaaaatctaaataaaaatccCATAGCAATCTATCAAATCAATCTTTAACAATCCCAAGAGCACTTTGGGTCTGACACCCGGGTCCTCTGTGCGTACAAGTATTATTCTTTTTggatatgtatattatttattaattttttcctctctcaaaCAGACCGTTGCCTGTGGATGAAATATGCTAGAAAATCGACCAGCCCTTCTCctccaaaaaatataataaataaataaaaaataaaatacaatcaaataaaaacatcagcaaGGGGTGAATTAATAACTGTGCACCATCCAGTCGACAGCTGCAGCGAAAGCGTTGTGCAGCTGCCTAGAATTATTTAACTTCTTGTGCATGCTAGGGTGACGCACACTATcttcacaaaaaatgaaataataataatagtaatagtaataataattaaaggaccgccccccccccagaaATGTTCAGCCCTTGGAAAAGCCAGAGAGCCAGTGTGATGAGCAGGTCACCAGCACTTATAAATGGAAAACTGCACACCAGACAGCACATGGCCGGGAAATCATGGGCAGCCATCACGTCTGCAACAGGAAGGAGCTGGGGGAAGGCATCGCTGTCCGCACCGCGCTTCCTCTGCTTCCTGCCACACTGCCCAGCCCGGCACATGTCAGGTACTCTCTCTCATAAGGGGCTGGCATTTATTCCAAAGTCCCACCATGTCTATTcctgttatttttaacaatgagaAAGTAACGGAGAGTGAAAGGAAGAACACTGCCTGAAACAAAGACGTGACCGAAGACTCGGAGATGGTCAGACAGCCAGACAGACAGCCAGCCCAGACCAGCTGGACTGTGAGCTCCTACTGTTTCCAATGACTGCATCTCAAATCAGTGTCACAAATAGAGCAGAATCTGCTCGTTCTGACACTTAACCTTCTActctgcatgtatgtgtgtgtatggggggggaCACAGACAGGGTCAAAACCAAAAACGTCTTGTTTCTGCATGCAAAAACATCAGGGCCAGTGCCAGTCCCCACGCCACACGCAGCACACACCCCCCAGCGCGAGGCGTCACTGGGACACTCCTGCTCCTGTCCATTAAGACTCAGGACTTGAAAAATCAAACCGCTTCTTCAACAGAGCCCCCTGAGGCCCtctacacttaaaacaaaacacaaggagAAACTAAAGGGAATAAAAATATGGACCCCCCCTCGTCTCTCACTCTTTGGTAGCAAATGGATTCAGCTTTAAAGTACCAACATATTactattatcatcatcatcatcatcattataatacaaattacattaaattatgcaAACTCTTCAAAGTTATGCAGTTGTACAAGTAGTTTGTTCATCTTTGAGGGGGAACCAAATTCCATCTATGCTGAACGTTCTCTACAGTGTCCCAAACCAGCTCACCTTCTGCCCTCAGTTTGGGCTCATGGGCCCGAGAGCTGCAGTGGCCCTCACCGAACACTGGCAGACACTTTACGACCAGAACCTCCCCCTTTCAGACCCAGGTTCGTAGAAGCCCTGCTCACCTGCACTCATCTGCTCTCAGAAACTAAACGCACTTCACCCGAGCTAGAGTGGGAGCTCCGGTGACGTCAGGAGTTCACAGGTCAAACGGCTGCCAGCTAGGGCAATTGGAAGGCCAGCCGGAGTCACATCCTGCATCCTGCGCTCTGCCGCGCTGCCCTACTGCCCTGCCACCTTGCCAATCCGCACTAGGCGAGCTGGGgctggaggaatgttaattttTCCCCTTCCGCGCTAACGAGCCACTTCTGGTTAATGATAGCTGTGCATTTCCCTGGAGTCAGCGCTGTGCCAccagacacacactcagacacagcTGGAACCCATTCTCTCTGCAAGTCTGCAAGCCTCCACCCCCATCTTGGCTACTCCTCCACCTCCATCGCAGTgcagcaagagagagagcgacTTGGGCTGGCCACAGGTTTCTAGGGGCTTTCAGGTGTCCTGCCTTGATGAGAATATACTCTCAAACAGGTTCCCCTTGTGCATTTAAAGCATCTGGTGGGTCTGCGATAATCCCACAGTGCCAGGAAAGAGAGGTTTTCCCTCCTGTGAACGAGGCAGCTGAGCAGCGTGTGAACGCAGCAGCGGGGAGGAAAATGCAGACGTTTACACCGCTCGAAAACgaaaaaataaagagcagaGTTGTTTTTAAGTTAACTTAGATTATTACACTTCTGAGGCCTGAAAAAGGAGTCCTTAagtatattataaaattatgattatgatattaAAAAGgctaaatatgtgtataaatcttaaaaagcaagcaagcaaagcGGATTCCCCACTATCAGCTCAAGCGGTTGTGGTCAGACTGCAGTCTCTTTGCAGACTGTGAACAGAGGACCCTGAACTCAGTaacaaaaatgcatgaaaaaaggTATTAAGAAAATAAGAGGCACAGGTTTGTgcatctggaaaataaaattgagaaaaaaaatcaaacaaataaaaaggttcTCTTGAAAACAGCATTGTTGCTTTAAAAGAACAGTCCAGTGTCACCTGGCCTCATATCTGTCACACTAATGCCACAGAGAAAGATGGGAGATCAAAGGCAAATGAAGATAAAACCAAAATTATGAACCTTTAAATCTGACAGAAAAAGCTGACGTTTTGTGTGATTGATTGTCTTTTAACTCTCGTAGGAAATTTATTCAGCTGTTTCAGTTCACAGTCTCGGTATTGGATACCTAGCAGGGTGTCCAAGCGACGGCCGAAGGCCCCTCATGCTTCTGTAATGACCCATCTCTGGCTCTCCAGGGGCCTGGGTCAGAAGGGCACAGTGCTCAGTCTGAATCCCCGCCTGTTGCTGGAAATATGCGAGCCTTGTGTCTGACATTGTCCACTTCATGGCTCATTTCCTGAGAAGCAGGAAATCTAAAAGCGTGGTGAGCTGGAAACTCATAAGTTTAAGAAttaggggagaaaaaaaagttcagGGTGTGCAAAACGGAAAAGAAGAATCACAGATACGTGTTCCTTAAAACAAACTCTCTAATCACACGATGTGCATGTGCATAACGCAGTACTTTTCAAAACCCTGCTACCCTGCTGTTCAGGAGCTCAAACCCAGCCTCTCTCTGCAGGGGGCATTCAGGCCCGTAGAGACTCACACACAGTGTCTCCCGGCGCCGTCCTGCTCGCCCTGTGGACTGTGCTGCCACTTCCAATGGTCCACTTCAGAGCTGTAGCAACAAAACCCGAACAGCCAATCCTGCTGTGCCAGTACAGCCCAGAGTCCCGCCTCGGCACAGGCCCTGCCCGGCACACTGCAGTGCAACATCACGATACGAACTGTGTTTAAGGCACTCGGGACAAAGCTGTGgggatgatgatgataaaataaaaagcaaaacaaacagcaaaaaaatctacattatCTAAGTAACCGATTATATTCAAACAAGGAAAATGACCAAGCTTGTTTTGTAAGACCAAGCTGGCTGCAAATGAAACTAAACCATATAGTAAATCAAGTCAAACTCCTACACACACAGCCCGACAGAAAGCCCACTCTTTTTCCCCCAGACATAGAGCTTGATAGCCCTGTTCTGCTCTCGGTAAAGCGTCATACTGAGCATGTATCTTAATGTCCTTCTCTGGGGGGGCACAGTGCTCCCTGTGCCCCCCTGCCATCCACAGTCTCGCTGCCCACCTGCCTTGACCAATCCCAGTTCCATCTCTGGCTCCCAGGTGCATCAGCCCTGTCACCTGGCTCTGTGGTATAGAAATCTAGCCCTATATGCACTAGCAGAAGatttgagatatatatatatatatatatattttgggagaggccagcaaaaaaaaattgtttagtttattttttctgttcttttcccCCTTGTTTACAAAAATAGACACCCAACTCTTTAAACATGAGACACCCAATTATACAATACAGCACGTTTTCAGAGTACTAAACTAGTATATACAAATGAGTCTCTTTAGGTTGTCTTTCTCATGGTTCTGAGAGCAAGGATGTAATCGTCATATTTAAGACATTGTGCTAGGAAGcaaggcattttctttttcctattataatataaacatataatcTTACAGTCTGAGGTTCAGACTCTGCGATTTCCAGACAACATTACTGTGAATCACAATTATGAACGACTGGGCTGTATAAGCAGGTAACTTcttaacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatcaatatgctgtacacacacacagtcactgactcactcacacacagacacacagtgaatgtactgtactgtccaaGTGCTTCACAGAGGAACACTCACGTCAGCATTCAACAGCAGACTGTGATGTCGCTTCTAATCTGGGAAatttccttcttcaagatcagAAGACATCAACTAGATTgcaaatcacacaaacaaacagacacacacacacacacacacacacacgtatcaATGCTGCAAAgcctcaaataataataatagaataaaataagcGGTAAAAAGAGAAGCGGGTAATGGGCCCGCTGCCGCAGTCCGCTCAGTTGCTGTGGTTGACGGGGGCGATGAAGGGGGCTGAGCGGTCGTTGGTCAGTGTCCTGCGCAGACGCACCCCTCTGCGGATCATGGTGAGCATGTCTCCCCCGGAGGAGGGCTCTCCTGGCGGTTCAGGTGGGGGCACGGGCTCGGGGTGCGGCAGCGGGGGTTCGGCGAGGGCACTCTCCGCCACAGTGCCCATGCTCGGGCTCTGGGGGGGCAGGCGGGGCTGCTGGCTGTAGTGTGCGTGCTGCTGCGGGTGCTGTGGGTACTGCAGGTGCTGCTGGTACTGGGGCGGGTAGTGGTGCTGGGCCGGCGTGGGCCCGGGTGGCTGCAGGCACTGCTGCTGGTactgcttctgctgctgctggtgcaGGGCGAACTGCTGCTGCTTGCTCATCTGGTACAGCTGCTCGGTGGAGCCGTGGCCCGGCTGCCCGGGGATGAAGGAGTAGTAGGGCGAGGGGATGGCGCTGAGGCTCTGGGTGGAGGTGCACAGGGCATGCTTGGTGTGGCTGAGGTCTGAGCGCCCGCCGCCCGCCGGCCCGCACACCAGCTCCTCACTGCCGCTGCGGCCACCGCCCAGGGGCACGCAGGGGCCCGGCGCCTTCATGGGCACCTGCGGCGTGCTGATGGGGATGGGCACGCCCCCACTGATGGTGCCGCGGCGGAAGTTGGGCTTGCTGGAGGGCTTGCGGCGGATGGTGGCCACGTGCGGCGGGCGCATCAGGGGCTCGGGGTCGGCCAGCAGGCTGACGGTGGAAGCGGGGCGCTTGGCCTGGAACATCTTGCGGTAGTTCAGGCTGATGTCGCTGTTGCGCGGGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34386 lncRNA downstream 68460 38017230 ~ 38017469 (-) True G27491
TU34352 lncRNA downstream 308611 37777069 ~ 37777318 (-) True G27463
TU34325 lncRNA downstream 515048 37570259 ~ 37570881 (-) True G27438
TU34323 lncRNA downstream 518363 37567203 ~ 37567566 (-) True G27436
TU34322 lncRNA downstream 518946 37566769 ~ 37566983 (-) True G27435
TU34469 lncRNA upstream 347725 38439603 ~ 38439862 (-) True G27557
TU34553 lncRNA upstream 618974 38710852 ~ 38712337 (-) True G27626
TU34574 lncRNA upstream 657249 38749127 ~ 38767568 (-) False G27639
TU34572 lncRNA upstream 672566 38764444 ~ 38767568 (-) True G27639
TU34602 lncRNA upstream 684283 38776161 ~ 38779752 (-) False G27661
AMCG00007944 mRNA downstream 149451 37925271 ~ 37936478 (-) True AMCG00007944
AMCG00007946 mRNA downstream 169453 37912578 ~ 37916476 (-) True AMCG00007946
AMCG00007945 mRNA downstream 209177 37866450 ~ 37876752 (-) True AMCG00007945
AMCG00007943 mRNA downstream 258737 37791441 ~ 37827192 (-) True AMCG00007943
AMCG00007939 mRNA downstream 566806 37500784 ~ 37519123 (-) True AMCG00007939
AMCG00007953 mRNA upstream 54641 38146519 ~ 38148924 (-) True AMCG00007953
AMCG00007954 mRNA upstream 73333 38165211 ~ 38176299 (-) True AMCG00007954
AMCG00007955 mRNA upstream 84643 38176521 ~ 38181573 (-) True AMCG00007955
AMCG00007958 mRNA upstream 335470 38427348 ~ 38434063 (-) True AMCG00007958
AMCG00007961 mRNA upstream 391933 38483811 ~ 38492269 (-) True AMCG00007961
TU34329 other downstream 497404 37573034 ~ 37588525 (-) True G27442
TU34326 other downstream 514441 37570957 ~ 37571488 (-) True G27439
TU34324 other downstream 516645 37567617 ~ 37569284 (-) True G27437
TU34303 other downstream 586537 37494911 ~ 37499392 (-) True G27416
TU34246 other downstream 842946 37240089 ~ 37242983 (-) False AMCG00007929
TU34421 other upstream 69408 38161286 ~ 38164542 (-) True G27522
TU34684 other upstream 955411 39047289 ~ 39049597 (-) False AMCG00007990
TU34686 other upstream 962275 39054153 ~ 39055679 (-) True G27720
TU34691 other upstream 997044 39088922 ~ 39091755 (-) False AMCG00007993
TU34865 other upstream 1408443 39500321 ~ 39504592 (-) True G27861

Expression Profile