RNA id: TU34416


Basic Information

Item Value
RNA id TU34416
length 1867
RNA type TUCP
GC content 0.45
exon number 1
gene id G27518
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38144984 ~ 38146850 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAACGATGGTTTCCTTGCCCCATTCTTTATTAGAAATTACTAAAACAAAGTGCTTATAATAAAGAACAGAacgtgtatttaaaaaaaactaactagTAGACTGTACAATAATTTAATCGAACAATAAatcagtcattaaaaaaaaaaaaaaaaaaagtactgatttaataggaaaataaaatatttaatatttttaaaaacaaaggcggtgaaaaaacagcaatttcCACATACAGGATGCTTTCCAGGTTGAGGTAGACAAAACGTGTGTGAACAGACTCTTACACCTGCACCCAGGAGCAGAGTCCACAGGACCCCCGGCACAAACAAAACTCAACTCTTCACCTCGAACAGTTCAAAAGGTGATTTTCATCAGTTTACGTTCATTTCAAAGGTATTTGCattgtttggaaaaaaataaataaaaaacccCATaatactacattattattaataataataacaacaacaacaacgaggTGCCTAGCTGGAGGAAGAGGGCAAGAGCAAATTCCTACCAGATAAGACAGCAGCAGAACCAATTGAttacaactaaaaaaaaaaaaaactgcctaCTCTCTCCAACCACTTCTAAGGCACCCAGAGAGAAAGCTCAACCTGTAAGTGATGAGGAAAATACCAGAGGAAAACCACCCAACCGTGGCTTTGAGGATTAATGGCGTCATAATGACATCAACCACAAGGAACATGTGACTGCATGTgaaggaaagaagaagaaagtaaAGGAAAGTGCAATGATTGGCAGATATTAATTTCCAAAGCCCTAATTAGAATATAAACTTGGGATCCAGCCCAAAACTAGCAGGAGAAAAACTTTATATTTAGACatgctggagaaaaaaaaaaaaaaaaaaaaaaaaactaccaaaCAGCACACAAGCAGCTAGATCAGgagattacaaaaataataaggtaagaaatgtgaaaaagagGGAGGATTCTGTGGAAATTCTAATCTTTCAAAACCCACTAATTACAAAACAATCTTCGGCTCTTTAACCTGCATTcttaatacagaaaaaaaaaaaagtttgtacaCAAAAGGGCCTCAGCTGAGAGATCCGCGACATTATGGCTATTGTCTGacaacaataatgaaaacaaacaacacaaaaaaggcCAACTTTGGCAAAAGGCTGACAACAGAAGCTCTAACATTGACATTCTGCTGCACTGGCCGCCAGTTTACGGTCTTAACTAAACTTTGGCAATGAACAGAGACAGGTCCAAGTCCGCACCCTGCAGTCCAACAGCAAACTACAGCAGGGAGCTCCTGGCTGGAATGGGACATCACAGATTGTCCACATGTCCTGCAGTTCCTGGCTGTGTCCACCCCAGTCCCAAATGagtgggaggaagaggaggaaggaggagaaagTCTTCAAGAATAAGAATTCCATTGTCTGGCAGGAGGTCTATGCATTACAGGGCAATGGCCAAGTCTTCCCCTGCTTGCTTTCctttcttccctccctccctccctccctctcccgtCTGTCCACTAGGCCCGTCCTCAGTGGGCCGCCTTCACCCTGCTGAGCTGCTCCAGTCTGTGTTTCAGCTGGTCTTGCCTGTGCCGCAGCGCCTCGCTCTTGGATCCCAGCTTCCTGCCCTCGCCCTCCAGCCCGCGGATGCACTCCCTGGCCTTCTTCAGGATCACCACCTTGGAGGCCTTGTCGTTGTTGGACAGCTCGGGCACGTGGTCGCGCAGGCGCAGGAAGCAGTTCTTCAGCTCGTTGCGCCGCTGCCTCTCCATCACGTTGTGCGTCCGCCgccgctcctcctcctccatgtcGGCCGAGAGACGGGCCGCGCTGCCGCCGGACCCGCGGCCCCGACCGGCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34393 lncRNA upstream 117061 38027380 ~ 38027923 (+) True G27497
TU34384 lncRNA upstream 127840 38016868 ~ 38017144 (+) True G27489
TU34351 lncRNA upstream 367522 37777065 ~ 37777462 (+) True G27462
TU34287 lncRNA upstream 645599 37495159 ~ 37499385 (+) True G27400
TU34216 lncRNA upstream 939028 37203870 ~ 37205956 (+) False AMCG00007923
TU34464 lncRNA downstream 292724 38439574 ~ 38439892 (+) True G27552
TU34465 lncRNA downstream 294686 38441536 ~ 38442071 (+) True G27553
TU34473 lncRNA downstream 334447 38481297 ~ 38482391 (+) True G27561
TU34503 lncRNA downstream 525021 38671871 ~ 38729032 (+) True G27581
TU34587 lncRNA downstream 645599 38792449 ~ 38834594 (+) True G27648
AMCG00007948 mRNA upstream 58233 38080756 ~ 38086751 (+) True AMCG00007948
AMCG00007951 mRNA upstream 74141 38067388 ~ 38070843 (+) True AMCG00007951
AMCG00007947 mRNA upstream 118134 38018892 ~ 38026850 (+) True AMCG00007947
AMCG00007950 mRNA upstream 130190 38011176 ~ 38014794 (+) True AMCG00007950
AMCG00007949 mRNA upstream 134189 38002950 ~ 38010795 (+) True AMCG00007949
AMCG00007952 mRNA downstream 21771 38168621 ~ 38170146 (+) True AMCG00007952
AMCG00007957 mRNA downstream 265660 38412510 ~ 38423155 (+) True AMCG00007957
AMCG00007956 mRNA downstream 326866 38473716 ~ 38476488 (+) True AMCG00007956
AMCG00007959 mRNA downstream 417625 38564475 ~ 38570223 (+) True AMCG00007959
AMCG00007965 mRNA downstream 429272 38576122 ~ 38605013 (+) True AMCG00007965
TU33841 other upstream 2524183 35611116 ~ 35620801 (+) False AMCG00007873
TU32939 other upstream 8369949 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 9141211 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 9690277 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 10050243 28083822 ~ 28094741 (+) True G25822
TU34423 other downstream 21720 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 209079 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 285195 38432045 ~ 38436595 (+) True G27551
TU34527 other downstream 545889 38692739 ~ 38708915 (+) True AMCG00007970
TU34851 other downstream 1356229 39503079 ~ 39504377 (+) True G27847

Expression Profile